| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0079 |
|---|
| Symbol | yrdD |
|---|
| ID | 6986299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 81946 |
|---|
| End bp | 82515 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643378442 |
|---|
| Product | DNA topoisomerase |
|---|
| Protein accession | YP_002261631 |
|---|
| Protein GI | 209693703 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.870328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGTA AAATAAACAA GCAACTGTTT CAAGCGCATG AACATGCATT AGATCATGAA
TCTTGCCCAC AATGCAGTGG TGAACTTGCC ATTCGTTATG GTAAGCGTGG TCCGTTTTTA
GGTTGTGGTA ATTACCCTGA GTGCGATTAT ATTCGCCCTC TTAAAAGTAA TGACGGTCAT
GTAGTTAAAG AGCTTGGTAT TCCCTGCCCT GAATGTGACA GTGAACTTGT TTTACGACAA
GGCCGATATG GAATGTTTAT AGGGTGTTCT TCATACCCAG AGTGTTCTCA TATTGAATCG
TTAGAACAGA AAAAAGAAGA ACCTAAAGAG CTATTGGCTT GCCCTAGTTG TCATTCTGGA
TCTTTACATG AGAAACAGTC TCGTTTTGGT AAGACTTTCT ATGCTTGTGA TGCTTATCCT
GTTTGTCGTT TTGTTGTTAA TTTTGCGCCA GAAAAAGGCA TATGTCAGCA GTGTGGTTTT
GAGTTGTTGC TAAGAAAAGA AATAGCAACA GGTTTAAAAT TGGTTTGTGC AGATAAAAAG
TGCAGTGTGG TACAAGATAT AAAAAAATAG
|
|---|
| Protein sequence | MSGKINKQLF QAHEHALDHE SCPQCSGELA IRYGKRGPFL GCGNYPECDY IRPLKSNDGH
VVKELGIPCP ECDSELVLRQ GRYGMFIGCS SYPECSHIES LEQKKEEPKE LLACPSCHSG
SLHEKQSRFG KTFYACDAYP VCRFVVNFAP EKGICQQCGF ELLLRKEIAT GLKLVCADKK
CSVVQDIKK
|
|---|
| |