Gene VSAL_I0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0010 
SymboldnaN 
ID6988411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp8866 
End bp9975 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content40% 
IMG OID643378383 
ProductDNA polymerase III subunit beta 
Protein accessionYP_002261572 
Protein GI209693644 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000914164 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTT CTATTGAACG CAGCCATTTA TTAAAACCGC TGCAACAAGT ATCTGGAGCC 
TTAGGTGGCC GTCCATCATT GCCTATTTTT GGTAATATTT TGCTTCAAGT TGAAAATGGT
CAACTGTCGA TGACAGCAAC AGATCTTGAA GTAGAACTTA TTAGTAATAT TCTGTTAGAA
GGGGATTTTG AAGCGGGTGC GATTACGGTG CCTTCTCGTA AGTTCTTAGA TATCTGTCGT
GGTTTACCTG ACGGTGCAAA TATTACTATT GTTTTAGAAG GTGATCGTGT TTTAGTTCGT
TCTGGACGTA GCCGATTTAC ATTAGCAACC TTACCAGCTC AAGATTTTCC GAATATAGAA
GGCTGGCAAA GTGAAGTTGA AATTACGCTT TCTCAAGCAC AACTTCGTAA GCTAATTGAA
AGTACGCAAT TCTCAATGGC AAACCAAGAT GTTCGTTATT ACCTTAATGG TATGATGTTT
GAAACTCAGG GGACTATTTT TCGCTCCGTT GCGACAGATG GACACCGAAT GGCAGTATGT
AACATGCCAG TAGAGTCAGA ACTTCCTGAG CAACAAGTGA TCATGCCACG CAAAGGTATT
CAAGAGCTAG TACGCCTTCT TGACTCGCCA GAACAGAGTG TTACGTTACA GTTTGGTAAT
TCAAATGTGC GGGCTGAGGT GAATAACTTT ATCTTCACTT CTAAGCTTGT TGATGGTCGT
TTTCCTGATT ATCGACGTGT AATGCCGCAA AGCAGTAATA AAACACTAGA AGCCGATTGT
GACGAATTGC GTCAAGCGTT TGCGCGTGCT GCTATTTTAT CGAATGAAAA ATTCCGAGGT
GTTCGTGTTA ATTTGGCAAA CAACCAAATG CGTATTACAG CGAACAACCC AGAGCAAGAA
GAAGCAGAAG AAATCTTAGA TGTCGATTTC CAAGGTGAAG ACATTGAAAT TGGTTTTAAC
GTTAGCTATG TACTAGATGT ACTAGATGTA CTTAATACGT TGAAATGTGA ACGAGTACGA
ATTTCGATGA CAACAGCAAA TGCGAGTGCA TTAGTGGAAG ATTGTGCGAA CGATGAAGCA
CAATATGTTG TTATGCCAAT TCGTCTGTAA
 
Protein sequence
MKFSIERSHL LKPLQQVSGA LGGRPSLPIF GNILLQVENG QLSMTATDLE VELISNILLE 
GDFEAGAITV PSRKFLDICR GLPDGANITI VLEGDRVLVR SGRSRFTLAT LPAQDFPNIE
GWQSEVEITL SQAQLRKLIE STQFSMANQD VRYYLNGMMF ETQGTIFRSV ATDGHRMAVC
NMPVESELPE QQVIMPRKGI QELVRLLDSP EQSVTLQFGN SNVRAEVNNF IFTSKLVDGR
FPDYRRVMPQ SSNKTLEADC DELRQAFARA AILSNEKFRG VRVNLANNQM RITANNPEQE
EAEEILDVDF QGEDIEIGFN VSYVLDVLDV LNTLKCERVR ISMTTANASA LVEDCANDEA
QYVVMPIRL