Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0006 |
Symbol | |
ID | 6989177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 4820 |
End bp | 5557 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378379 |
Product | putative amino-acid ABC transporter ATP-binding protein |
Protein accession | YP_002261568 |
Protein GI | 209693640 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00283619 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAAAA TAACCAATCT ACATAAAAGC TTTGGAACCA CAGAAGTCCT CTCTGGCATC GATTTAACGA TTAATAAAGG AGAGATAATT GCGATTATAG GATCGAGTGG AACCGGTAAA TCAACGCTGC TCAGATGCAT CAATTTTCTT GAAACCGCAG ACCAAGGCAC CATAACAATC GATGATGTCA GTGTTAATAC AGAAAAATAT ACCAAAACAG AAGTACTCGC ATTACGACGA AAAACAGGGT TTATCTTTCA AAACTACGCC CTTTTCGCCC ACTTAACGGC AAGGCAAAAC ATTGCAGAAG GCTTAATAAC TGTCCACAAG TGGAATAAAG CCGACGCATT AAAACGATCA CAACAAATCT TAGATGATAT TGGACTCGGA GACAAAGGGG ATAGCTACCC TGCAGCCCTC TCTGGAGGAC AACAACAACG TGTTGGTATT GGTAGAGCAA TGGCATTAGA AACAGAGTTG CTATTGTTTG ATGAACCCAC GTCAGCACTC GATCCTGAAT GGGTAAATGA GGTTCTGACA TTGATGAAAA AACTGGCTAC CCAACATCAA ACGATGTTGG TCGTTACGCA TGAAATGCAA TTTGCCAAAG AAGTGGCTGA TCGTGTTATC TATATGGCCG ATGGAAAGAT CGTAGAACAA GGAACACCAG AGCAGATTTT TGGTTATCCA CAGGATCTGA AATTAAAGAA ATTCTTAAAC CAAGTTGGGA TCGCATAA
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Protein sequence | MIKITNLHKS FGTTEVLSGI DLTINKGEII AIIGSSGTGK STLLRCINFL ETADQGTITI DDVSVNTEKY TKTEVLALRR KTGFIFQNYA LFAHLTARQN IAEGLITVHK WNKADALKRS QQILDDIGLG DKGDSYPAAL SGGQQQRVGI GRAMALETEL LLFDEPTSAL DPEWVNEVLT LMKKLATQHQ TMLVVTHEMQ FAKEVADRVI YMADGKIVEQ GTPEQIFGYP QDLKLKKFLN QVGIA
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