Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0003 |
Symbol | oxaA |
ID | 6989323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2277 |
End bp | 3902 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378376 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_002261565 |
Protein GI | 209693637 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0110357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACCC AACGTAATAT TCTGTTGCTT GCACTGGCTT TAGTTTCTTT TTTACTTTTC CAACAATGGC AAGTAGAAAC TAATCCGCAG CAACCAGCTA CAGTTAGTAC CGTTCAACAG ACACACAAGA ACGGTGATGT TCCAACTTCG TCAACAGCAA ACAGTGATGC ACCAGTGGAT TCAGCTCAGT CTGATAAACT GATCACAATT ACGACTGATG TGCTTACTTT AAAAGTAGAT ACATTAGGCG GTGACATTAT TGAATCTGTT CTTAATAAAT ACGATGCTGA ATTAGACTCT AAAGCAAAAT TCGTTCTTCT TAAGAATGAT GCTGATCATA GCTATATTGC TCAAAGTGGT TTGATCGGTC CTCAAGGTAT TGATTCAAAT ACCGGCCGTG CACAATTTAC GGCTAAAAAA ACAGATTACG TTTTAGCTGA TGGCCAAAAC GAATTACGCA TTCCTTTAAC ATTAGAGAAA AACGGTATTA CTTATACTAA AACTCTAATC GTTAAGCGTG ACAGCTACGC AATTGATGTT GAATATACGG TGAACAACCA ATCTTCAGCA CCAGCGACAG TAGAAATGTA CGCAAACTTA AAGCAAAACT TATTGGATGA CGGTGGCAGT TTAACAATGC CTACGTACCG TGGTGGTGCT TATTCAACTG AAGACACTCG CTATAAAAAA TACAGCTTTG ATGACATGGA AGATAAGAAC TTATCTATCG ACATGACAAA TGGTCAAGGT TGGGCTGGTA TGTTGCAACA TTATTTTGCA TCCGCTTGGA TCCCTCGTAA CGTTAATGAC GCAACACTGA CGACTCGTGT TGCTGGTGAT TACGGTTACA TTGGCGTTCG TATGCCTTCA GTAACGATTC CTGCAGGTCA AGAAGATACG TTGACTGCTA CGCTTTGGAC AGGTCCAAAA CTTCAACCAC AAATGGCAGC GACTGCTAAA TACTTAGATT TAAGTGTTGA TTACGGTTGG TTATGGTTCA TCGCTTCTCC ACTTCACAAA CTATTGTCTT TCATTCAAAG CATCGTTGGA AACTGGGGTC TAGCAATTAT GATCCTGACG TTCATCGTTC GTGGTGCAAT GTACCCGCTA ACGAAAGCAC AATATACATC AATGGCTAAA ATGCGCATGC TTCAACCTAA GTTGGCAGCA ATGCGTGAAC GCATTGGCGA TGACCGTCAA CGCATGAGCC AAGAAATGAT GGAGCTTTAT AAGAAAGAAA AAGTAAACCC ACTAGGTGGT TGTTTACCTA TCGTTCTTCA AATGCCAATC TTTATTTCGC TATATTGGGC ACTAATGGAA TCCGTTGAAC TTCGTCATGC ACCATTCTTT GGTTGGATCA CGGATTTATC AGCACAAGAC CCATACTACA TCCTGCCATT GTTAATGGGT GCGAGTATGT TCTTAATCCA GAAAATGAGC CCAACAACAG TAACGGATCC AATGCAACAG AAGATCATGA CATTCATTCC TGTTATGTTC ACCGTGTTCT TCTTATGGTT CCCAGCTGGC CTAGTTCTTT ACTGGTTAGT ATCAAACGTC GTAACGTTAA TTCAGCAAAC TCTGATTTAT CGTGCACTTG AGAAAAAAGG CTTACATTCT AAGTAA
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Protein sequence | MDTQRNILLL ALALVSFLLF QQWQVETNPQ QPATVSTVQQ THKNGDVPTS STANSDAPVD SAQSDKLITI TTDVLTLKVD TLGGDIIESV LNKYDAELDS KAKFVLLKND ADHSYIAQSG LIGPQGIDSN TGRAQFTAKK TDYVLADGQN ELRIPLTLEK NGITYTKTLI VKRDSYAIDV EYTVNNQSSA PATVEMYANL KQNLLDDGGS LTMPTYRGGA YSTEDTRYKK YSFDDMEDKN LSIDMTNGQG WAGMLQHYFA SAWIPRNVND ATLTTRVAGD YGYIGVRMPS VTIPAGQEDT LTATLWTGPK LQPQMAATAK YLDLSVDYGW LWFIASPLHK LLSFIQSIVG NWGLAIMILT FIVRGAMYPL TKAQYTSMAK MRMLQPKLAA MRERIGDDRQ RMSQEMMELY KKEKVNPLGG CLPIVLQMPI FISLYWALME SVELRHAPFF GWITDLSAQD PYYILPLLMG ASMFLIQKMS PTTVTDPMQQ KIMTFIPVMF TVFFLWFPAG LVLYWLVSNV VTLIQQTLIY RALEKKGLHS K
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