Gene VSAL_I0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0003 
SymboloxaA 
ID6989323 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp2277 
End bp3902 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content41% 
IMG OID643378376 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_002261565 
Protein GI209693637 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0110357 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATACCC AACGTAATAT TCTGTTGCTT GCACTGGCTT TAGTTTCTTT TTTACTTTTC 
CAACAATGGC AAGTAGAAAC TAATCCGCAG CAACCAGCTA CAGTTAGTAC CGTTCAACAG
ACACACAAGA ACGGTGATGT TCCAACTTCG TCAACAGCAA ACAGTGATGC ACCAGTGGAT
TCAGCTCAGT CTGATAAACT GATCACAATT ACGACTGATG TGCTTACTTT AAAAGTAGAT
ACATTAGGCG GTGACATTAT TGAATCTGTT CTTAATAAAT ACGATGCTGA ATTAGACTCT
AAAGCAAAAT TCGTTCTTCT TAAGAATGAT GCTGATCATA GCTATATTGC TCAAAGTGGT
TTGATCGGTC CTCAAGGTAT TGATTCAAAT ACCGGCCGTG CACAATTTAC GGCTAAAAAA
ACAGATTACG TTTTAGCTGA TGGCCAAAAC GAATTACGCA TTCCTTTAAC ATTAGAGAAA
AACGGTATTA CTTATACTAA AACTCTAATC GTTAAGCGTG ACAGCTACGC AATTGATGTT
GAATATACGG TGAACAACCA ATCTTCAGCA CCAGCGACAG TAGAAATGTA CGCAAACTTA
AAGCAAAACT TATTGGATGA CGGTGGCAGT TTAACAATGC CTACGTACCG TGGTGGTGCT
TATTCAACTG AAGACACTCG CTATAAAAAA TACAGCTTTG ATGACATGGA AGATAAGAAC
TTATCTATCG ACATGACAAA TGGTCAAGGT TGGGCTGGTA TGTTGCAACA TTATTTTGCA
TCCGCTTGGA TCCCTCGTAA CGTTAATGAC GCAACACTGA CGACTCGTGT TGCTGGTGAT
TACGGTTACA TTGGCGTTCG TATGCCTTCA GTAACGATTC CTGCAGGTCA AGAAGATACG
TTGACTGCTA CGCTTTGGAC AGGTCCAAAA CTTCAACCAC AAATGGCAGC GACTGCTAAA
TACTTAGATT TAAGTGTTGA TTACGGTTGG TTATGGTTCA TCGCTTCTCC ACTTCACAAA
CTATTGTCTT TCATTCAAAG CATCGTTGGA AACTGGGGTC TAGCAATTAT GATCCTGACG
TTCATCGTTC GTGGTGCAAT GTACCCGCTA ACGAAAGCAC AATATACATC AATGGCTAAA
ATGCGCATGC TTCAACCTAA GTTGGCAGCA ATGCGTGAAC GCATTGGCGA TGACCGTCAA
CGCATGAGCC AAGAAATGAT GGAGCTTTAT AAGAAAGAAA AAGTAAACCC ACTAGGTGGT
TGTTTACCTA TCGTTCTTCA AATGCCAATC TTTATTTCGC TATATTGGGC ACTAATGGAA
TCCGTTGAAC TTCGTCATGC ACCATTCTTT GGTTGGATCA CGGATTTATC AGCACAAGAC
CCATACTACA TCCTGCCATT GTTAATGGGT GCGAGTATGT TCTTAATCCA GAAAATGAGC
CCAACAACAG TAACGGATCC AATGCAACAG AAGATCATGA CATTCATTCC TGTTATGTTC
ACCGTGTTCT TCTTATGGTT CCCAGCTGGC CTAGTTCTTT ACTGGTTAGT ATCAAACGTC
GTAACGTTAA TTCAGCAAAC TCTGATTTAT CGTGCACTTG AGAAAAAAGG CTTACATTCT
AAGTAA
 
Protein sequence
MDTQRNILLL ALALVSFLLF QQWQVETNPQ QPATVSTVQQ THKNGDVPTS STANSDAPVD 
SAQSDKLITI TTDVLTLKVD TLGGDIIESV LNKYDAELDS KAKFVLLKND ADHSYIAQSG
LIGPQGIDSN TGRAQFTAKK TDYVLADGQN ELRIPLTLEK NGITYTKTLI VKRDSYAIDV
EYTVNNQSSA PATVEMYANL KQNLLDDGGS LTMPTYRGGA YSTEDTRYKK YSFDDMEDKN
LSIDMTNGQG WAGMLQHYFA SAWIPRNVND ATLTTRVAGD YGYIGVRMPS VTIPAGQEDT
LTATLWTGPK LQPQMAATAK YLDLSVDYGW LWFIASPLHK LLSFIQSIVG NWGLAIMILT
FIVRGAMYPL TKAQYTSMAK MRMLQPKLAA MRERIGDDRQ RMSQEMMELY KKEKVNPLGG
CLPIVLQMPI FISLYWALME SVELRHAPFF GWITDLSAQD PYYILPLLMG ASMFLIQKMS
PTTVTDPMQQ KIMTFIPVMF TVFFLWFPAG LVLYWLVSNV VTLIQQTLIY RALEKKGLHS
K