| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0002 |
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| Symbol | trmE |
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| ID | 6988808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 811 |
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| End bp | 2178 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643378375 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002261564 |
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| Protein GI | 209693636 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTAC ATACAGACAC CATCGTTGCA CAAGCAACAG CCCCTGGACG AGGCGGCGTA
GGCATCATTC GAGTATCAGG CCCTAAAGCT CAACAAGTCG CCCTAGAAGT CGTAGGAAAG
ACACTTAAGC CGCGTTACGC TGAGTACACG CCATTTAAAG ATGATAATGG TTTAGAACTT
GATCAAGGCA TCGCCCTGTA TTTTCCTAAT CCACATTCTT TTACTGGTGA AGATGTTCTA
GAGCTTCAAG GACATGGCGG TCCTGTCGTT ATGGATATGT TGATTAAACG CATCTTAAAA
ATTGAAGGGA TCCGAACGGC TCGCCCAGGA GAGTTCTCAG AAAGAGCTTT TTTGAACGAT
AAAATGGATT TAGCCCAAGC CGAAGCCATT GCCGATTTAA TTGATGCAAG TTCAGAAGAA
GCAGCAAAAT CAGCACTTAA TTCATTACAA GGTGTTTTCT CTAGAAAAAT AAACACCTTA
GTTGAATCAC TTATTTATCT GCGTATCTAC GTTGAAGCTG CGATAGATTT CCCAGAAGAA
GAAATCGACT TTCTGGCGGA TGGCAAAGTG AGTGGTGACT TACAAGGCAT TATTGATAAC
CTTAACGCGG TTCGCCAAGA AGCGAATCAA GGAGCCATTA TGCGTGAAGG CATGAAGGTA
GTTATTGCAG GTCGCCCAAA CGCAGGTAAA TCGAGTCTTC TGAACGCATT ATCAGGCAAA
GACAGCGCTA TCGTTACTGA TATCGCAGGC ACAACCCGTG ATGTCTTGAG AGAGCATATT
CACATTGATG GTATGCCATT GCATATTATT GATACCGCAG GTCTTCGAGA AGCGTCAGAT
GAAGTAGAAC GTATTGGTAT AGAACGCGCG TGGCAAGAAA TAGCCCAAGC AGACCGAGTT
TTATTTATGG TTGATGGCAC AACAACAGAT GCAACTGACC CTAAAGTTAT CTGGCCTGAA
TTTCTAGATC GATTGCCTAA GAATATGGGT ATGACAGTCA TTCGAAATAA AGCCGATCAA
ACCGGTGAAA ATCTTGGTAT TTGCCACGTT AACGATCCTA CTCTTATTCG CTTATCAGCA
AAAACAGGTG AAGGTGTTGA TGCTTTGCGA TTGCATTTAA AAGAATGCAT GGGTTTCTCT
GGCAATCAAG AAGGTGGCTT TATGGCACGC AGACGTCATC TCGAAGCATT AGAAAAAGCA
TCTGAACACC TTGATATCGG TCAGCAACAA CTTGAAGGTT ATATGGCAGG AGAAATCCTG
GCTGAAGAAC TAAGAATCGC TCAACAACAC CTTAGTGAAA TAACCGGTGA ATTCAGTTCT
GATGACTTAT TAGGGCGGAT TTTTACTTCT TTCTGTATTG GTAAATAA
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| Protein sequence | MTLHTDTIVA QATAPGRGGV GIIRVSGPKA QQVALEVVGK TLKPRYAEYT PFKDDNGLEL
DQGIALYFPN PHSFTGEDVL ELQGHGGPVV MDMLIKRILK IEGIRTARPG EFSERAFLND
KMDLAQAEAI ADLIDASSEE AAKSALNSLQ GVFSRKINTL VESLIYLRIY VEAAIDFPEE
EIDFLADGKV SGDLQGIIDN LNAVRQEANQ GAIMREGMKV VIAGRPNAGK SSLLNALSGK
DSAIVTDIAG TTRDVLREHI HIDGMPLHII DTAGLREASD EVERIGIERA WQEIAQADRV
LFMVDGTTTD ATDPKVIWPE FLDRLPKNMG MTVIRNKADQ TGENLGICHV NDPTLIRLSA
KTGEGVDALR LHLKECMGFS GNQEGGFMAR RRHLEALEKA SEHLDIGQQQ LEGYMAGEIL
AEELRIAQQH LSEITGEFSS DDLLGRIFTS FCIGK
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