Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_p840_17 |
Symbol | traH |
ID | 6961432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011311 |
Strand | + |
Start bp | 13541 |
End bp | 14926 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | |
Product | conjugative transfer protein TraH |
Protein accession | YP_002261507 |
Protein GI | 215778367 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 62 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA CACGCCCTCA CTTATTGCCG CTCTGTTTGG TGCTTTCCTT TTCAGTGTCC GCCAACGTCA ATCACTCCCT TGGGGGATTT TTTGACGAGC TTGGCTATCA CGCCAATGTC AGCAACCCAA GCGCCTTTAA AGGCCAAAGT GCCAACTATT ACAACGGCGG CAGCCTGTTT GTTCGCACCA AAATTCAAAA CGCTCAACTG GCCACGATGA CGGTGCCCTC CATTAAAGCC GGTTGCAACG GCATCGATGC GTTCATGGGC GGCTTTTCTC ACATCAGCTC AGACCAATTG GTTCAGTTCG GTAAATCGGT GGTTGCCAAC GCAACCCCAT TCGCCGTTGA TTTGGCGCTG CAAACCTGGG CACCTCAAAT CAAACAAATC CGTGATAACT TGCAAAGCAT TGCCGACAAA TGGGTCAATC AGTCCATCAA TTCGTGTGAA ACGGCTCAAG CCGCCGTGGG CGGATTGGCA AGCTTTGCGC TGCCTCAAGC CAAACAGCAC GTCTGCGCCA CCATGGGCAC ACAAAATAAC GCCTTCGCCG ATTGGGTCGC GGCCAAACAA GAGTGTGGCG TCGGTGGAAG AACCCCGAGC CAACTCGTGA ATGCCCGTAA CACACCAGAA TTGGAAGACA TCACCAAAAC CTCACACAAC ATCGTGTGGT CAGCCATCAT GAAAAACAGT TTTCTCTCCA GTGATACGGA GCTTGCCGAG TTTTTAATGA CGCTCTCTGG CACCTACGTG TATAACGCCA ACGGTCAACC GACTTACTAC CCATCACTGC TTGATGGCAA CAACAATCTG GTGGACGCTC TATTGAATGG CGGCACCATT TCAGGCTATG ACTGTGACAA CACCGCCGCC AAAGCCTGTT TGTCCCTTCG CCGTAAAAAC ACGTCCATTT CAAGCGGCAG TGCCATGCAA AGCAAAATAT ACGCACTGCT TAATGAGATG AATCAATCGC TCATGAATGA CCGCCCTTTA ACTCAACAGC ACACCGCCTT TTTAGAATAC ACCGACATTC CTATGCTCAG TTTCTTAAAA GAATACGCCC AAGGCGAAGG GACAGTAAGC ACGTCTCTGC TTGATAAATA CGCCCGAGTC ATTGCGATTA ATCTCTTAAG TAAGTACCTC AATAACATGC TGAACGTGAC CCAATACTCA CTCTCTAACA CCCAAAACGA CAAGAGTGAC ATTGCCCTCA TCAGTGACGA CATCTCCAAC GCCAAACGAT TCATCAGCGA GCTCGATGAA AAAGCCACTC GCGCCCTCAT CGCTCAAGAA GAAATGATCG CCAATGCTAA GGTCAGAAAA GCCCAAATGG ACGCCGCATT GAGCAGTAAA ACCCGAAATA ACCTCTACTT TGGAGACAAA TCATGA
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Protein sequence | MKKTRPHLLP LCLVLSFSVS ANVNHSLGGF FDELGYHANV SNPSAFKGQS ANYYNGGSLF VRTKIQNAQL ATMTVPSIKA GCNGIDAFMG GFSHISSDQL VQFGKSVVAN ATPFAVDLAL QTWAPQIKQI RDNLQSIADK WVNQSINSCE TAQAAVGGLA SFALPQAKQH VCATMGTQNN AFADWVAAKQ ECGVGGRTPS QLVNARNTPE LEDITKTSHN IVWSAIMKNS FLSSDTELAE FLMTLSGTYV YNANGQPTYY PSLLDGNNNL VDALLNGGTI SGYDCDNTAA KACLSLRRKN TSISSGSAMQ SKIYALLNEM NQSLMNDRPL TQQHTAFLEY TDIPMLSFLK EYAQGEGTVS TSLLDKYARV IAINLLSKYL NNMLNVTQYS LSNTQNDKSD IALISDDISN AKRFISELDE KATRALIAQE EMIANAKVRK AQMDAALSSK TRNNLYFGDK S
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