Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_p840_06 |
Symbol | traB |
ID | 6961426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011311 |
Strand | + |
Start bp | 2337 |
End bp | 3767 |
Gene Length | 1431 bp |
Protein Length | 476 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | conjugative transfer protein TraB |
Protein accession | YP_002261496 |
Protein GI | 215778356 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 60 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAATA AATGGCTTAA AAAAAGCACC AACGACGCCA CGGGCAGTTT TGAGCAAGGC TGCTTGATTA ATGAGCGCAG CATCAAACGC AACGGCATCA TTACACTGGT CATTCTTGTT ACCCTTAGCA CCCTGGGTGG TGTCGGTTAC ACCGTCACTC GACCATCAAC GCCCCCACCG ATAGAGCGTC CTCCGGTGGA CTTTGGCGCC ATCATTGAAG ACGACTTTAT CAGTGCCGAC AATCAATCGG CACTCAGTGC GCAGCAAGAC ACCCTTCACA CCCAAGAGCG CACCATTGCG GCACTAAAAA ATGAAGTCAA TCGCGTCAAC GCCAAACTGG ACAACACCGT GAACTTACAA GAAGAGAGCT TTGCTCGCTT TAAAGACAAG ATGCAGGCGA CCTTTGAGCG CCAACGCGCT GAAATGGTGT TGCAAAAAAA AGAAGCGCCC GCTCAGGAGA CGGACCTGTC CGTCGCCTTT GGTGATAAGT CATTACCGCC TCGCGCCATT CCAAGCAGCA AGCACAACCC CAACGCCCCT GAGTTTTCTT ATCAGAGCGC GGATGCGCCC ATCTTTGATA CCACCGGCAT TGACAGCTAC GAGTTTAATT GGGCGCTCTC CGAGGAGGAG AAACCCAAGC GCACCATTCT GAATTACGTT CCGACGGGCA CCTTTGTCAC CGCCTTGGTG ACGGGCGGCG CAGACGTCAA TGCAGGAGTG CTTGGCCAAG GAGACACGGT GCCGATGGTA TTTCAAACCA TTAATGCCGG AATATTGCCC AATGGGCAAT CATCACGCCT TAAGGACTGC ACCATCACCG GCTCAAGCTA TGGCGAAATA TCATCCAGTC GCGGGATAGT GCGCACCAAT CGCATGAGCT GCATTTTTGA TGACGGCGAA ATCATCGATT TGGCGGTGAA AGGCACGGTG TTTAATTTTG GTCGCAACGG CATTCGAGGC ACCACCATTT TACGCAATGG GAAAATCGTT CAAATGGCGG GACTCTCAGG CATTTTGACG GGCATTGGCG AGACAGGCAA AGCCTTGTCT TCCACAACGT CCGTGTCCGC CCTTGGCTCG ACCTCCAGTC TGAACGGCTC GGACGCGGCC TTAAATTTGT TGGGCAATGC CACCGCCTCT GTGGGCGCTA AGCTCTCGGA TTACTACATT CAACTGGCCG AGCTCTACCA CCCGATTGTC GAATTAAACC CTGGCAATGT CGTGAACATT GTTTTTTTAG AAGGTTTTCC GTTGGACGCG CTCGGTATTG AGAAGTACGA AGCCAAACAG CAAGTCCAAG AAAGTAGGTC CGGCAACAAT CAACTGCTCG ATGTCATCAC CAACAACCCA CTGGCCAATC AATTACCTCA AGGGGTAAAG GCCGCCATGG GCGCCCAAAC CGCGCCACTG ACCGATTTTG GCTCACGATA A
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Protein sequence | MLNKWLKKST NDATGSFEQG CLINERSIKR NGIITLVILV TLSTLGGVGY TVTRPSTPPP IERPPVDFGA IIEDDFISAD NQSALSAQQD TLHTQERTIA ALKNEVNRVN AKLDNTVNLQ EESFARFKDK MQATFERQRA EMVLQKKEAP AQETDLSVAF GDKSLPPRAI PSSKHNPNAP EFSYQSADAP IFDTTGIDSY EFNWALSEEE KPKRTILNYV PTGTFVTALV TGGADVNAGV LGQGDTVPMV FQTINAGILP NGQSSRLKDC TITGSSYGEI SSSRGIVRTN RMSCIFDDGE IIDLAVKGTV FNFGRNGIRG TTILRNGKIV QMAGLSGILT GIGETGKALS STTSVSALGS TSSLNGSDAA LNLLGNATAS VGAKLSDYYI QLAELYHPIV ELNPGNVVNI VFLEGFPLDA LGIEKYEAKQ QVQESRSGNN QLLDVITNNP LANQLPQGVK AAMGAQTAPL TDFGSR
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