Gene Lferr_2847 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2847 
Symbol 
ID6878851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2828438 
End bp2829121 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content61% 
IMG OID642790701 
Productphosphoglycolate phosphatase 
Protein accessionYP_002221239 
Protein GI198284918 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.212796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACGC TGAATGCCGG CACGCGGTTT ACCGCGCGCG TCGTCCTGCT CGATCTGGAT 
GGCACGCTGG TAGATACCGC GCCGGACCTG GCTGGCGCGG CCAACCATGT GCTGCAAAAA
CTCGGGCGTG CGCCCGCCGA AATGCCGGTC ATTCGTGGCT TCATCGGTAA CGGTGTCCGT
GAACTGATGC GTCGCGCGCT GGCGATCCAC AGCGATCCCA GCGAAGTGGA ACTGGATGCG
GCCATGGTCG ATTTCAGCAA GTACTACGGA GAGCATCTGC TGGATCATAG CGTGATCTAC
CCGGGCGTGC GCAGAACGCT GGAGACCTTG CAGGCTCAGG GCCGGGAACT GGTATGTATC
ACCAACAAGA CCGCCGCCTT CACCGTGCCG CTGCTCCAGC GACTGGACCT CTACGATTTT
TTCGGCCTGA TCTTGTCGGG CGACAGCCTG CCACGGAAAA AGCCCGACCC GTTACCCCTG
ACCCATACGG CTGAACACTT TCATCAGCCG GTGGAGAACT GCCTGCTGGT CGGCGATTCA
CGTAACGACG CTGAGGCGGC GCGGGCGGCG GGTATGCCCG TTGCCTGCGT GACCTACGGT
TATAACGGCG ATGAGCCCGT CCATTGCCTG GAGCCCGATG CGGTGCTGGA CAACATGAGC
GAATTATTGG ATATTCTGGC GTAG
 
Protein sequence
MATLNAGTRF TARVVLLDLD GTLVDTAPDL AGAANHVLQK LGRAPAEMPV IRGFIGNGVR 
ELMRRALAIH SDPSEVELDA AMVDFSKYYG EHLLDHSVIY PGVRRTLETL QAQGRELVCI
TNKTAAFTVP LLQRLDLYDF FGLILSGDSL PRKKPDPLPL THTAEHFHQP VENCLLVGDS
RNDAEAARAA GMPVACVTYG YNGDEPVHCL EPDAVLDNMS ELLDILA