| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2819 |
|---|
| Symbol | |
|---|
| ID | 6878822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2803292 |
|---|
| End bp | 2803741 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642790673 |
|---|
| Product | lipoprotein |
|---|
| Protein accession | YP_002221212 |
|---|
| Protein GI | 198284891 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.271135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGC TGAGGCCGCA CCCCGCGTTT CTCTCCGCTG CCATCCTTCT GGGCGGTTGT
ACCACCCAAC CCCCAGCGCT AACCAGCATG GGAGTGCCCA AACCGGACAC CGCCCATATC
AGCCAGAGGG TGCTGGATTG GGCGGGCACC TACGCCGGGG TGTTGCCCTG TGCGGACTGT
CCCGGTGTGC GCGAGACCAT TACGCTTAAC AAAAACCTCA CCATGGAGAT CACTACTCAG
TATGTGGGTC GCGGTGACCA GATTTTTCGT CGGGGAAACC AATTCTCCTG GGTCGACGGC
AACACCATTC GGCTGGAAGG CATGGGCGGT GGGCCGACTC TCTACCGTGT CAGTGAAAAC
CAGCTCACCC AACTGGGCAT GGATGGCAAG CCTGTCACGG GTCCGCTGGC TGCCCGTTTT
ATCCTGAAAA AATTGCCAAA ACCCCGGTGA
|
|---|
| Protein sequence | MAVLRPHPAF LSAAILLGGC TTQPPALTSM GVPKPDTAHI SQRVLDWAGT YAGVLPCADC
PGVRETITLN KNLTMEITTQ YVGRGDQIFR RGNQFSWVDG NTIRLEGMGG GPTLYRVSEN
QLTQLGMDGK PVTGPLAARF ILKKLPKPR
|
|---|
| |