| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2574 |
|---|
| Symbol | |
|---|
| ID | 6878573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 2545290 |
|---|
| End bp | 2546405 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642790431 |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_002220975 |
|---|
| Protein GI | 198284654 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3524] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAAGG CCCTCTGGAC CCGGATCAGA AATCTGAACA AACTCTTTAT CTATGTGGTG
GTTCTACCCA CCGCGGTAGC AATTCTCTAT TTCGGGATCA TCGCCTCGCC GGTTTATATC
TCCGAGTCCC GCTTCATCGT ATACAGCCCC AGCCAACATA TGAGCAGTTC CGGTCTCAGC
AGCCTGCTCA GCGGTCTGTC GGGCAGCAGC TCCATGACCG GCACCTACTC TGTCCACGAC
TACATCGAAT CCTGGGACGC CATGATGGCG GTAAACCGCG CCTACAACCT GAAAGAGGTG
TATGGCAATA GCGGGATCGA CATCTTCGGC CGTTTTGGCG GTCTCTTTTA CCCCTCCAGC
AGCTACGTGA AACTGCTGCG CTATTACCAG TCCATGGTCA CCGACAACCT GGACAACACC
AGCGGCATCA CCAAACTCAA GGTGCGCGCC TACAGCGCCG CGGATGCCCA AAAGATCAAC
GCCTTCCTCC TGCAAAAAAG CGAAGCGCTG ATCAACCAGA TGAATGATCA AGCCAGGGAA
AACGCGGTCA GCTATGCCCA GCAAGATGTA AACAAGGCCG AGGTGCGGGT AAATCAGGCC
ACCGTCGCGC TCGCCGCATA CCGGAATCAG CATGCGGTAT TCAGCCCCGA TCCCCAGTCG
GCGCTACAGC TCCAGCTCAT ATCCCAGCTC CAGACCCAGG TCATCTCTGA AAAAGCGCAA
CTCGCCGCCA TTCTTCAACA CGCGCCACAA AACCCGCAGA TCCCCGTGCT GCGCAGTGGT
ATCGCGGCGC TGGTGTCTGA AGTGGACAAG GAAAAAGCCA AGGTAGTCGG CGGAAAAAGC
TCCCTGGCCA GTAAGGATCC GGCCTATGTG CGGCTGTCCC TCGCTCAGGC GTTGGCGACA
AAGATCCTGG AGGCGGCGGT CACCTCGCTG GAACAGGCCA AGGTGGAGGC ACAGAAGCAG
CAACTCTACC TGGAACCCAT CTCCAGGCCC AATCTGCCCG ATGCACCCCA AGAGCCGCAC
CGCGTACGCG ATATCCTGGG CGTATTGGCC CTGGCGTTGG TGGTGTGGGG GGTGCTGAGC
ATACTGGTCG CCGGCGTGCG AGAACACCAT GACTAA
|
|---|
| Protein sequence | MLKALWTRIR NLNKLFIYVV VLPTAVAILY FGIIASPVYI SESRFIVYSP SQHMSSSGLS
SLLSGLSGSS SMTGTYSVHD YIESWDAMMA VNRAYNLKEV YGNSGIDIFG RFGGLFYPSS
SYVKLLRYYQ SMVTDNLDNT SGITKLKVRA YSAADAQKIN AFLLQKSEAL INQMNDQARE
NAVSYAQQDV NKAEVRVNQA TVALAAYRNQ HAVFSPDPQS ALQLQLISQL QTQVISEKAQ
LAAILQHAPQ NPQIPVLRSG IAALVSEVDK EKAKVVGGKS SLASKDPAYV RLSLAQALAT
KILEAAVTSL EQAKVEAQKQ QLYLEPISRP NLPDAPQEPH RVRDILGVLA LALVVWGVLS
ILVAGVREHH D
|
|---|
| |