Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2552 |
Symbol | |
ID | 6878551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 2525412 |
End bp | 2527775 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642790409 |
Product | TonB-dependent receptor |
Protein accession | YP_002220953 |
Protein GI | 198284632 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000691451 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.635758 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGC GGAATCGTAT GAACCCGTTA TTGTTCGCAA TGTGCACCGC AGGGTTTTGC ACCTGGAATA CCATAACAGC AGCTTATGGT GCCAATTCAG GCAGCCAATC CACCAGTGTC GGCGAGGTAA ACGCTTCGGC CAGCGCACTT TCTGAATCTG CCAAGGCGCT GGCCAGCACT GACGGCAAGC TGACCAGGAA GAAAATCTTC AAATCCACCC AATCCCAGGC GGTTGTCGGG AAGCGTGAAA TTCAGGGTGT AGGTCCCGCC GCAGGGGCGG CCCAGGCACT CTCTCTGGCA CCCGGCATCG CCGTTCGTGG TTATGGCGGC ATCTCCTCGA CCGCGCGCTA TGAAATCGCG GTGCGCGGCG TAAAGGTAGG CTGGTCATCC GTGAATGGCG ACGTCGAACG CAATGGCTTG ACGGTGCTGT TTGACGGAAT CCCCATGAAC AACCTGATTT CACATAACGG CGGCTGGGAT TCCAACGAAA TCCCCATTCT CCAGATGATC CATGGCATCA ACGTGACCTA CGGCCCCGGA AATCCCGCCG GCCGGTGGTT CGACAGCGTC GGTGGCACCA TCAACTTTGT GCCGCTGCAG CCATCCGTAA AACCGAGCGC CGAGATAGGT ACCACCTTTG GCAGTAACGG CACCCTCGGC TACAACTTCG ATCTCAAAAC GGGAATGTAC GATGGCTGGT CCGCGATCCT GGCCGGAGGT TATACGAAAA ACAATACGTT CCGCACAGGT ACGTTCAATG CGCCGTCCCA GTCTCTCGCC TATTTTGGCA AGGCGGTGAA GACCTTCCGG AGTGGCACCT TCAGCCTTGG CGGCTATGTC GACAGTTCGC GCGAGTTCAG GCCCAATTTC ATACCGGTTA CCCCGATACA GGGCATCACC ACCCAGGGCC TGAACGCCAA TGCGCCTTTG TATAGCCAAC AGACCAGCGG GTTTTACGCA TCACTGCCTG AGTCCATCTG GTTTAAGCAA TTGAAAGTGC AAGGCTACAT GCTGTACTCC AAGCTGAACC TCCGCCTCAG CAGGGACGTC ACGCTGCACG AAATGGCCTG GTATCGCCAT GGCCACCGGG TGCATTACCG CATCACCAAC TTTGTACCAG GAAGCAGCGT AAATTCCGAG TATTACAACC CGAGCTCGGA TACTTATGGG GACAAGCTGT ATTTCGACTG GCGCCTGCCT ATGAACCTCG TGAAGGCCGG AGGGTCATGG ATTCATCAGC AATACACCAC ACCTTATGCG GGATACAATA CGCTTCTGGG CACCAGTCCC TCCTTCCCCA TTCAGTACAA TAGTGACGTT CTGTATAACA ACTATCTGAC AGGCTTCGTT CAGGACACGT TCACTCCGTT CTCCGGCTTC AAGATTACTC CGGGCATTGC TGCGGTCCAG TACCAGACCC AGATGTACAA TAATGGGGCC CAGGCATTCC CCAACCTTCC GGCGGGCGCG CAGAATCAGA CGCTCATTAA TAGCGCTTCG GATACCATAT CCCGCTTGGA ACCTTCCATC GGGGTCCGCT TTGCACCGGT CAAATGGGGT TCGGTATATG CGCACTATGG CCGTTCTTAT CAGAATCCTA CGGATAACAA CTACGGGGCC TACAATGGTA ACGGCGGCAC CATAGATCTA AACAGCCTGA AACCGGTAAA AAGTACGGAT TACGAAGTCG GCGCCAAGTT TTTAGTACAC AACTGGATGT TGTTGCATAA CTTTACATTC AACGTCAACT ACTACCACGA CAGTCTCGCC AACGAAACCA TCGCGACCTT CCTGTCAAAC ATCTCCCAAA CCAAGTTCGC CGCGGCCGAT GCGGTGGTGA ACGGCGTCAA TATCGCGATG GCCGACAACC CCTCCTGGAA CTGGCATCTG TTCGCCAATC TGGCGCTCAA TCATTCGTAC TACACCTCGT ATACGCCGCA GGGTGGAGGT ACGACCTTGT ATGGCGCCAA CGTATCTTAT AGCCCGTACC TCACCATGAG CGCGGGTATT GACTATCGCT ACTATTATCA TGGATTCCTT TTCTCGCCCC AGTTTGTGGA TCAATACACA AGCTCGGAGT ATCTATTCAA CAACGGGACC GGCGCGCCAT CGCACCAGAA GCAGCCGGGA TACAATGTCT CCAACCTCAG CCTTGGGATA AAAACGACCC GATTGAATCC ATACATCCCG ACACTGAAAG ATGTGAAGCT CTCCGTGGGA ATATACAATC TCTTTGATGC GCGCTATAAC CCCATTGAGT ACATCACCAG TGGTGGATAC TTCGGTGGCA ACAGTGCCGG CGCCATTCTG GCTGATCCGG GGGCCCCACG GCAGTATTTT ATGACGGTAT CGGCGAAGTT CTAA
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Protein sequence | MNKRNRMNPL LFAMCTAGFC TWNTITAAYG ANSGSQSTSV GEVNASASAL SESAKALAST DGKLTRKKIF KSTQSQAVVG KREIQGVGPA AGAAQALSLA PGIAVRGYGG ISSTARYEIA VRGVKVGWSS VNGDVERNGL TVLFDGIPMN NLISHNGGWD SNEIPILQMI HGINVTYGPG NPAGRWFDSV GGTINFVPLQ PSVKPSAEIG TTFGSNGTLG YNFDLKTGMY DGWSAILAGG YTKNNTFRTG TFNAPSQSLA YFGKAVKTFR SGTFSLGGYV DSSREFRPNF IPVTPIQGIT TQGLNANAPL YSQQTSGFYA SLPESIWFKQ LKVQGYMLYS KLNLRLSRDV TLHEMAWYRH GHRVHYRITN FVPGSSVNSE YYNPSSDTYG DKLYFDWRLP MNLVKAGGSW IHQQYTTPYA GYNTLLGTSP SFPIQYNSDV LYNNYLTGFV QDTFTPFSGF KITPGIAAVQ YQTQMYNNGA QAFPNLPAGA QNQTLINSAS DTISRLEPSI GVRFAPVKWG SVYAHYGRSY QNPTDNNYGA YNGNGGTIDL NSLKPVKSTD YEVGAKFLVH NWMLLHNFTF NVNYYHDSLA NETIATFLSN ISQTKFAAAD AVVNGVNIAM ADNPSWNWHL FANLALNHSY YTSYTPQGGG TTLYGANVSY SPYLTMSAGI DYRYYYHGFL FSPQFVDQYT SSEYLFNNGT GAPSHQKQPG YNVSNLSLGI KTTRLNPYIP TLKDVKLSVG IYNLFDARYN PIEYITSGGY FGGNSAGAIL ADPGAPRQYF MTVSAKF
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