Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2546 |
Symbol | |
ID | 6878545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 2512667 |
End bp | 2516059 |
Gene Length | 3393 bp |
Protein Length | 1130 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642790403 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_002220947 |
Protein GI | 198284626 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCATC CGGAAATCGA ACCGGGCTTT ATCGTCCTCC ACGGCGACCG TCTGGAGTGG CTCAGCGATG CCGTTCTGGA GTGGCTGCGC GCGCACCCGC TTCGGCCACT GGAAGAGGAA ATCTTCCTCG TCCAGAGCAA CGGCATCGCC GAGTGGCTGC AATGGACCCT GGCAGCCCAT GAGGGCATCT GTGCCGCGGT GCGCGTCGCC CTGCCGGGGC GTTTTCTCTG GGAAAGCTAT GCACGGGTGC TGGGCACCGG CATCGTCTCG GCCCGCTCGC CGCTGGACAA GGCACCGCTC ACCTGGCGAC TGATGCGGCT CTTGCCGGAA CTGCTGGCCC ATGCCGATTT CGCCCCCTTG CGGCATTTTA TCGGCCAGTC ACAGCGGCCG GACGGCGCAT TGGAGCGGCG CTGGCAAATG GCCGCGCAGA TCGCCGATCT GTTCGACCAG TATCAGGTCT ATCGTGGCGA CTGGCTGGCG GACTGGACCA CGGACCAGTC CCTGCTGCGG CGGGGCGATG GCGAGCGGGT GACTCTGCCC GCCGACCAGC GCTGGCAACC CCGGCTCTGG CAGGCGTTAC GGCAGGATCT GCACAGCCGC GGGCTGGACC AGGCTCCGGG CCGGGCGCAG GTGCATGAGC AATTTCTCGC CGCCCTGAAT GCCGGGCGCC CCCCCGTAAC GCCCTTGCCC CGCCGCGTCG TCATCTTCGG AGCAGCCACC CTGCCGGAAC AGAGTCTGAC CGCGCTGGCG GCGCTGGGCC GGCAGATGCA GGTGATCCTT GCGGTGCCCA ACCCCTGCCG CTACCACTGG GCCGACATCG TCTCGGGGCG CGAATTGCTC AGACGCGAAC GACGTCGCCA ACCCCCGCGC AACGGCCACG ATCTCTCCGC CACCGCCACA GAGGACCTGC ATCAGTTCGG CAATCCCCTG CTCGCCGCCT GGGGCCGTCA GGGCCGGGAT TTTCTCGATC TGCTGGACCA GTTCGATGAA ACGGCGGCAT TGCAGCGGCA GATGGACATC CCGCGCATCG ATCTCTTCAG CGAAGATCAG GGCGACACCC TCCTGCGCCA GTTGCAGGTA CAAATCCGCG ATCTGGAAGG TATCAGGCCG GAAACCTGCA CCGCACTGGA CGACAACGAT CACTCCGTGG TCTTTCACAT CGCCCACAGC GCCCTGCGCG AGGTGCAGAT CCTCCACGAT CAACTGCTGG ACCGCTTTGC CACTGGCAAA CTGCAGCCCC GCGACGTGAT CGTCATGGTC CCGGAGATCG GCGGCTTTGC GCCCCTCATC CGCGCCACTT TCGATCAGTA TGACCGGGAG GACAGGCGTT ACATTCCCTA CCACATCGTC GATCTGCAGG CCCGCGACGA ACAGCCCCTG CTCCTGGCCC TGGACTGGCT GCTGCGGCTG CCCGAGCAGC GCTGCCGACA GAGCGAAATC CGTGATCTCC TCAACTGCCC CGCCCTGCGC CGGCGCTTTG GTCTGGAACT GGAGGACCTG CCCATCGTGC AACACTGGCT GGCCGGAGCC GGCTGGCGCT GGGGGCTCTC GGCAGAGCAC CGGGCCGCGC TGGGCATGCC CCATTGCGGT TCCCAGAACA GCGGCGACTT TGCCCTGCAA CGCCTCTGCC TCGGCTATGC CAGCGGCGAC GACAGCCATT TCTCCGGGAT CGAGGCCTAC GGCGAGGTGG GTGGGTTGGA CGCCGCGCTC CTCGGCCCCC TCGGTCAATT GCTGGAGAAG CTGGCGCACT GGCAGCACGT TCTGGGCGAA TCCCTGGTGC CGGAGCACTG GGGTGAAGCG GCCCGCAATC TGCTCACGGA CTTTTTCAGC GCCAGCGATG ACGACGATGA AGCCCTCCTG CAAAATCTGG AAGAGGCCCT GCGCCAATGG CAGACGGATT GCGCGGCGGC AGATTTTAAC GAAGCGCTCC CCCTCGCGGT ATTTCGCGGC GCCTGGCTGG AGATGCTGGA TGCGCCGGAT CTGGGGCGCA GCTTTCTTGG CGGCGGAGTC ACCTTCTGCA CCCTCCTGCC CATGCGCGCG GTGCCCTACC CGCTGGTCTG CCTGCTCGGT ATGAACGAGG GCGATTACCC GCGGCGCAGC CCCCGTCCGG ACTTCGATCT CATGGCGCTA CCCGGCATGG CCCGCCCCGG CGACCGCTCC CGCCGCGATG ACGACCGTTA TCTGATGCTG GAGGCCCTCC TGGCCGCCCG TCGGGAACTC TACGTCAGTT GGGCGGGAAG GGATCAGCGC AATAACCATG AACGGGCGCC CTCCCTGCTG GTGGCGCAGT TGCGGGAGGC CATTCGCGAC GGCTGGCCGC CGGCCCTGGA AAAGCGCACT TTCGAGCATC CCCTGCAACC CTTCAGCCCC GACTATCTGG CCGGCAAACC CGGCCTGCGC ACCTGGGCTC GCGAGTGGTA TCCCTCTCCG CACAGCGCCC CGGAAAACGC CGCGCTACCC GACCCCGCCG AGATCACCCC CCGCAGCATC CGCGAGCTGC TGGAGTTTTT TCGCCTGCCC GCTCGTGCCT TTTACCGGCA ACGCCTGCGC ACGGACTTCA ACGAAGAAGA TCCGGCTGAG GAGGACGACG AACCCTTCAC GCTGGACAGC CTTGAGACCT ATCATCTGCT TGAAGACCTG CTCCGCGCCG CGGAAAAAAA CGGCCCTGAC CGGATTGCCG AAAGGGTGCG GGCACAACGG CGCAGTGGTC GCTATCCCCT CGCGGGCATG GCGTCGAGGA CCGCGACCGC ACTGCTCGAC GACGTCACTC CCGTCCTGAC CGTCTGGCGG GAGATCGGCA CGGAATGGAC CGCAGCGCCG CAACGACGGG TCGTTCACCG TGCCCGCGGC CGGATATTGC TGGAGGACTG GCTGCCCGCC TTGTACCAAA ACAACGCAGG AGACCTCGCC TTCGTCCAGC TCCGCGCCAG TCGCCTGCTG AATAAAGACA GCAAAAAACC CGAAGGGGAT AAACTCGCAG CCCTCTGGCT CCAGCAGTTG CTCGCCAACG CCGTCGGCCT GCGCTGCGGT GGCATCGTGG TGGGCCGGGA TGTGCTTGTC CGCGCCGCGC CACCGCCACC GGGCGCCATT GCCGCACTGG ACGATCTGCT GGATCTCTGG CAGGAAGGTC TCTGCGAGCC CCTGCCGGTC ACCCTCAAAA CCGCCCTCGT CAGCCTGCAG GGCAAAAACC CGGCACCCAT TTACGACGGC AATGACCGCC TGCCCGGAGA AGCCCGGAAA GATCTCAGCC TGTTCCGCGA TTATCCCGAC TTCGCCACCC TCAGCAGCGC CCGAACCGGG CCGCAACGAC GCGGCTTTGC AGAATACGCC GCAGCCCTCT ACCGCCCCTT CGCCGGCTGG CTGGAAACTT TGGAGTGGCA GGCGCATCCA TGA
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Protein sequence | MNHPEIEPGF IVLHGDRLEW LSDAVLEWLR AHPLRPLEEE IFLVQSNGIA EWLQWTLAAH EGICAAVRVA LPGRFLWESY ARVLGTGIVS ARSPLDKAPL TWRLMRLLPE LLAHADFAPL RHFIGQSQRP DGALERRWQM AAQIADLFDQ YQVYRGDWLA DWTTDQSLLR RGDGERVTLP ADQRWQPRLW QALRQDLHSR GLDQAPGRAQ VHEQFLAALN AGRPPVTPLP RRVVIFGAAT LPEQSLTALA ALGRQMQVIL AVPNPCRYHW ADIVSGRELL RRERRRQPPR NGHDLSATAT EDLHQFGNPL LAAWGRQGRD FLDLLDQFDE TAALQRQMDI PRIDLFSEDQ GDTLLRQLQV QIRDLEGIRP ETCTALDDND HSVVFHIAHS ALREVQILHD QLLDRFATGK LQPRDVIVMV PEIGGFAPLI RATFDQYDRE DRRYIPYHIV DLQARDEQPL LLALDWLLRL PEQRCRQSEI RDLLNCPALR RRFGLELEDL PIVQHWLAGA GWRWGLSAEH RAALGMPHCG SQNSGDFALQ RLCLGYASGD DSHFSGIEAY GEVGGLDAAL LGPLGQLLEK LAHWQHVLGE SLVPEHWGEA ARNLLTDFFS ASDDDDEALL QNLEEALRQW QTDCAAADFN EALPLAVFRG AWLEMLDAPD LGRSFLGGGV TFCTLLPMRA VPYPLVCLLG MNEGDYPRRS PRPDFDLMAL PGMARPGDRS RRDDDRYLML EALLAARREL YVSWAGRDQR NNHERAPSLL VAQLREAIRD GWPPALEKRT FEHPLQPFSP DYLAGKPGLR TWAREWYPSP HSAPENAALP DPAEITPRSI RELLEFFRLP ARAFYRQRLR TDFNEEDPAE EDDEPFTLDS LETYHLLEDL LRAAEKNGPD RIAERVRAQR RSGRYPLAGM ASRTATALLD DVTPVLTVWR EIGTEWTAAP QRRVVHRARG RILLEDWLPA LYQNNAGDLA FVQLRASRLL NKDSKKPEGD KLAALWLQQL LANAVGLRCG GIVVGRDVLV RAAPPPPGAI AALDDLLDLW QEGLCEPLPV TLKTALVSLQ GKNPAPIYDG NDRLPGEARK DLSLFRDYPD FATLSSARTG PQRRGFAEYA AALYRPFAGW LETLEWQAHP
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