Gene Lferr_2484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2484 
Symbol 
ID6878482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2449680 
End bp2450795 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content60% 
IMG OID642790341 
ProductABC-2 type transporter 
Protein accessionYP_002220886 
Protein GI198284565 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTGC AACGCCTGCG CGGACTGATC CGCAAGGAAT TCATCCAGAT CCTGCGCGAC 
CCTTCAGCCA TCGCCATCGC CTTTTTCATG CCCGTATTTC TGCTGTTTCT GTTTGGCTAC
GGTGTATCTC TGGATGCCAA GCACGTGCCG GTCGCCGTCG TAGTGGACCA ACCGACGGCG
GAAACCAGTG CCTTCGTGGG CGGCTTGCAA CAGTCCCGCT ATTTCGAGCC ACAGATATAC
ACCAGCATGC ACAGTGCCCG GCAGGCACTG ATGGCACGCA AGGCCGATGG CATCCTCTGG
CTACGCTCGG ACTTCAGCCG CCAGATACTA CGGGGAAATA CCGCCTCCAT CGGTGTTCTG
ATCAACGGGG TAGATGCCAA CAATGCGCGC ATTCTGGAGG GCTATATGCA GGGCATCTGG
CAGAACTGGC TGCAACAGCG CGCGTTCAAC GCCGGAGCCC CGCTGATCAT CCCGGTGAAC
GGCGAAGACC GCATCTGGTT CAATCCCGCC CTGCGCAGCC GGGACTATCT GGTGCCGGGT
CTGATCGCGG TGATCATGAC CCTCATTGGC GCCTTGCTGA CCGCCTTGGT GGTAGCCCGT
GAGTGGGAAC GCGGCACCAT GGAGGCCCTC ATGGCCACTC CGGTCACCAT GAGCGAGATT
CTGCTGGGCA AACTGATTCC GTATTTTATC ATGGGCATGG GCGGCATGCT GCTCTCCGTG
GCACTGGCCG TCTGGCTTTT CACCGTCCCC CTGGTCGGTA GTTTCTGGGT GCTGCTCGCC
TGCTCGGCGC TCTTTCTGCT GACGGCGCTG GGCATGGGGT TGCTGATTTC CAGTGTCGCC
CGCAATCAGT TTGTGGCCGG GCAGATCGCC ATCATCGTCA CCTTTCTGCC CGCCTTTATT
CTTTCGGGCT TCATCTTCGA TATCCAGTCG ATGCCGGCGG CCATCCGCAT CATCACCCAT
ATTGTCGCCG CCCGCTATTT CGTGAGTATC CTGCAGACCA TCTTCCTCGC CGGGGACGTC
TGGCCCATCA TTCTCTGGAA CAGTCTGGCG CTGCTGCTGA TGGCGGCGTT TTTCCTCGGC
GTCACCTTGC GTCGTTCACA CAAGAGGCTG GACTGA
 
Protein sequence
MNLQRLRGLI RKEFIQILRD PSAIAIAFFM PVFLLFLFGY GVSLDAKHVP VAVVVDQPTA 
ETSAFVGGLQ QSRYFEPQIY TSMHSARQAL MARKADGILW LRSDFSRQIL RGNTASIGVL
INGVDANNAR ILEGYMQGIW QNWLQQRAFN AGAPLIIPVN GEDRIWFNPA LRSRDYLVPG
LIAVIMTLIG ALLTALVVAR EWERGTMEAL MATPVTMSEI LLGKLIPYFI MGMGGMLLSV
ALAVWLFTVP LVGSFWVLLA CSALFLLTAL GMGLLISSVA RNQFVAGQIA IIVTFLPAFI
LSGFIFDIQS MPAAIRIITH IVAARYFVSI LQTIFLAGDV WPIILWNSLA LLLMAAFFLG
VTLRRSHKRL D