| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2479 |
|---|
| Symbol | |
|---|
| ID | 6878477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2444365 |
|---|
| End bp | 2445675 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642790336 |
|---|
| Product | arsenical pump membrane protein |
|---|
| Protein accession | YP_002220881 |
|---|
| Protein GI | 198284560 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
|---|
| TIGRFAM ID | [TIGR00935] arsenical pump membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCG TCGCCATATT TCTCGTCACC CTGATTCTCG TCATCTGGCA ACCCAAGGGC
CTCAGCATCG GCTGGAGCGC CATGGGTGGC GCTGTCGTGG CGCTGGCCAC CGGCGTCATC
ACCTGGAGTG ACATTCCCAT TGTCTGGCAC ATTGTCTGGG ATGCCACCTT TACCTTTGTG
GCCTTGATTA TCATCTCGCT GATCCTCGAT GAGGCAGGAT TTTTTCACTG GGCGGCACTG
CATGTGGTTC GCTGGGGTGG TGGTCGCGGG CGCCTGCTCT TTCCTTTGAT CGTCGTGCTG
GGGGCCATGA TTGCTGCGGT GTTCGCCAAC GACGGCGCGG CGTTGCTGCT CACCCCGATC
GTCATGGCCA TATTGCTGCG CCTGGATTTC ACCCCGGCGG CCACCTTTGC CTTTGTCATC
GCCACGGGTT TCGTGGCCGA TACCACCAGC CTGCCGCTGA TGATTTCCAA TCTGGTGAAC
ATTGTCAGTG CCAATTATTT CAACATCAGT TTTGACCGTT ATGCGACGGT GATGGTGCCC
GTGGATCTGG TGGCCCTGGC GGCGACGCTG GGCGTGCTCT GGCTCTATTT CCGGCGGGTG
GTGCCACGCC GATATCTGAC CCGTGACCTG CCCGAACCTG CTTCTGTCAT CATGGATCAC
GTGGTTTTTC GGGCCAGTTT CCCGGTTCTG ATTCTGTTGT TGGTGGCCTA TTTTGTCACT
GCGCAATGGC AGGTTCCGGT CTCCGTGGTG ACCGGAACCG GTGCGTTGAT CCTGTTGGCT
CTGGCCGGGC GTTGGCTACA GGGCGGGCGC GGCGCGCGGA TTCCCGTGCG CAAAGTGCTG
CGGGAAGCCC CTTGGGCGAT CGTGGTCTTC AGTCTGGGTA TGTATCTGGT GGTTTATGGA
TTACGCAACG CCGGACTCAC CAGTTATGTG GCCATGGCCC TGCACTGGTT TGCTGGTCAC
GGGACCGTAG CAGCGGCGCT GGGCACGGGG TTTCTCGCGG CCCTGCTGTC TTCCATCATG
AACAATATGC CAGCGGTACT GGTGGGAGCG CTGGCTATCC ATCAACTGTC CTCGGTAGCA
ACAGACCCCT TGCTCCGGGA GATCATGGTC TACGCCAATG TTATCGGCTG TGATCTCGGC
CCCAAGTTTA CCCCGATCGG CAGCCTGGCG ACCCTGCTCT GGCTGCATGT GCTGAGTCGC
AAAGGTATGA CCGTGACCTG GGGACAGTAC ATGAGAACGG GTCTGCTCAT TACCCCGCCG
GTACTGCTGG TCACGCTACT GGCCCTGGCC TGGTGGCTGC CGCTGGCTTG A
|
|---|
| Protein sequence | MLAVAIFLVT LILVIWQPKG LSIGWSAMGG AVVALATGVI TWSDIPIVWH IVWDATFTFV
ALIIISLILD EAGFFHWAAL HVVRWGGGRG RLLFPLIVVL GAMIAAVFAN DGAALLLTPI
VMAILLRLDF TPAATFAFVI ATGFVADTTS LPLMISNLVN IVSANYFNIS FDRYATVMVP
VDLVALAATL GVLWLYFRRV VPRRYLTRDL PEPASVIMDH VVFRASFPVL ILLLVAYFVT
AQWQVPVSVV TGTGALILLA LAGRWLQGGR GARIPVRKVL REAPWAIVVF SLGMYLVVYG
LRNAGLTSYV AMALHWFAGH GTVAAALGTG FLAALLSSIM NNMPAVLVGA LAIHQLSSVA
TDPLLREIMV YANVIGCDLG PKFTPIGSLA TLLWLHVLSR KGMTVTWGQY MRTGLLITPP
VLLVTLLALA WWLPLA
|
|---|
| |