Gene Lferr_2470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2470 
Symbol 
ID6878468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2436464 
End bp2437984 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content59% 
IMG OID642790327 
Productprotease Do 
Protein accessionYP_002220872 
Protein GI198284551 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.769337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAATG ATCGCCCGAG TGTGATGTTG AAGCGCCCCA AACTGGTAAT CACTGCCGTC 
GTGGCGGCAT GTTTTGGTTT TTCACTGGGT GCAGCGGAGT GGGCGCAAGC CGACGCCCCC
GCGGCCCCGG CCCTTTCCAT CTCGACCAAC ACAGTTCCCC AGAAGGCGCT GGTCGCCTTG
CCGGATTTTA CCCCGATTAT CGACCGTTAT GGTCCCGCGG TGGTCAACAT CAGCAGCACC
ACCAACAAGG TCATTCACCA GCAGGCCAAT CCCTTTCCGC CAAACTCGCC TTTTTACCAG
TTTTTCCATC ACTTCATGGC GCCCGGACAG GGCGGTGGTC CCGGACCACA GCAGCATGAA
AAAATCCAAT CTCTCGGTTC CGGCTTCATC ATCAGTCCCG ACGGCTATAT CGTCACCGCC
GGTCACGTCG TTCGCGGCGC TAACCATATC GTCGTTACCC TCACCACCCA CCACGCCTAT
CCGGCCAAAC TGATCGGCCT GTCGGTGCGT TACGATACGG CACTGCTCAA AATCAACGCC
AAGAACCTAC CCACTGTGCC CATCGGCAAC TCCGACGATT TGAAGGTTGG CCAGTGGCTG
CTCGCCGTTG GCGCGCCGTT CGGTTTCTAT AACACAGTGA CCCAGGGTGT AGTCAGCGCC
ATGAATCGCC CGTTACCCGA TGATGAATAC ATCCCCTTTA TCCAGAGCGA CGTACCCATC
AATCCCGGCA ACTCGGGTGG GCCACTCTTC AACATGAATG GCCAGGTGAT CGGCATCAAC
GACCAGATCT ATACCAACAG CGGTGGCTAT ATGGGTCTGT CGTTCTCCAT CCCCATCAAT
ACCGTGATGC GGGTGGTGCA GGACTTCAAA AATCACAAGG CAATTCAGTT TGGCTATCTG
GGGGTCGAGG TACAGGACGT CACGCCGCAA ATGGCGCAGG CGCTGCACCT CACGGAACCC
GTCGGCGCCC TCATCGCGTC CGTGGAACCC GGCAGCCCGG CGGCCAAGGC GGGCATCAGG
CCCGGTGACG TCATCGTCAC CTATGATAAC AAGCCGGTGT ACAATGTCGG ACAGTTGCCA
CCTATGGTAG GCAACACCCT GCCAGGCACC CACGCCAAGG TCGGCATCCT CCACCGCGGA
AAAGCGGAAA CCAAAGATGT CCTGATTGCC GCCCTGCCCA AAAACATGGA AGGGCCTTCC
GGCAGCCAGG AACCTTCCAC GGCCGCCAAA GTGGGCAAAG TCTCCCGCAT GGGCATCCAT
GTCCAGTCGC TGACCCCCAG CATTGAGAAG CAGTTGGATG TGCATCATGG CGTCGTGGTG
GTCGGCGTTA GTGAAGGCGC GGCTGCGGAG GCAGGGATCA TGCCGGGTAT GATCATCCAG
CAGATCGATC AGCAGGACGT CAACAGTCCC GCCGAGTTGG AGCATATCGT TGCCGGTCTG
CCGGCCGGTC AGCCCATCCC GCTGCTGGTG CGGCAAGGCA AGGCCAGCAT CTACGTGGTG
GTGACGCTAC CCAAGAAGTA G
 
Protein sequence
MANDRPSVML KRPKLVITAV VAACFGFSLG AAEWAQADAP AAPALSISTN TVPQKALVAL 
PDFTPIIDRY GPAVVNISST TNKVIHQQAN PFPPNSPFYQ FFHHFMAPGQ GGGPGPQQHE
KIQSLGSGFI ISPDGYIVTA GHVVRGANHI VVTLTTHHAY PAKLIGLSVR YDTALLKINA
KNLPTVPIGN SDDLKVGQWL LAVGAPFGFY NTVTQGVVSA MNRPLPDDEY IPFIQSDVPI
NPGNSGGPLF NMNGQVIGIN DQIYTNSGGY MGLSFSIPIN TVMRVVQDFK NHKAIQFGYL
GVEVQDVTPQ MAQALHLTEP VGALIASVEP GSPAAKAGIR PGDVIVTYDN KPVYNVGQLP
PMVGNTLPGT HAKVGILHRG KAETKDVLIA ALPKNMEGPS GSQEPSTAAK VGKVSRMGIH
VQSLTPSIEK QLDVHHGVVV VGVSEGAAAE AGIMPGMIIQ QIDQQDVNSP AELEHIVAGL
PAGQPIPLLV RQGKASIYVV VTLPKK