| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2370 |
|---|
| Symbol | |
|---|
| ID | 6878366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2341689 |
|---|
| End bp | 2342549 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642790231 |
|---|
| Product | RNA polymerase, sigma 32 subunit, RpoH |
|---|
| Protein accession | YP_002220778 |
|---|
| Protein GI | 198284457 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.228679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000736942 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAC TTGCGATAGC CAGTAGAGAT TTGGTCAGCC CCGACGGGCT GGCGGGGTAT
CTGCGTTTTG TGAACGCCCA ACCGCTGCTG CGGCCGGAAG AAGAACGTGA TCTGGCCCGG
CGCCTGCGCG ATCACGGCGA TGTGGATGCG GCCAAGGATC TGGTGCTCAG CCACCTGCGC
TTCGTGGTGC GGGTGGCGCG GGGTTATCGG GGATATGGAT TGCAGGAAGC CGACTTGATT
CAGGAGGGCA ATATCGGCCT GATGAAGGCG GTGAAGCGTT ACGACCCGGA TCATGGCGTA
CGTCTGGTCT CCTTTGCGGT GCATTGGGTC AAGGCGGAGA TTCACGAATT CATCCTGCGC
AACTGGCGTA TTGTCAAGGT GGCCACCACC AAGGCGCAAC GCAAACTGTT CTTCAACCTC
CGTTCCAGCC GCAGCCATAC CGGCTGGATG AGCGGTGAGG AAAGTGCCGC CATGGCGGAC
GATCTGGGCG TTACCCAGGC CCAGGTACTG GAGATGGAAG GGCGGATGTC TGGTTACGAC
TATTCGCTCA ACCTCGAACC GGATGAGGAA CGGGAGGGCG GACGTGCTCC GGATCTGGCG
GATCCCACCG GGTCGCCCAT TGAGCAACTG GTGGAGCGGG ACTGGGATCA GCAGCAGCAC
AGGGCCTTGC ATACGGCGTT GTCGGCCCTG CCCCAGAGGG ATCGCTACAT CATTGAAAAC
CGCTGGCTGA GCGACGACCC CAAGACCTTG CAGGTGTTGG GCGATGAGCT GGGTGTTTCG
GCAGAACGGG TGCGGCAACT GGAAAAAAGC AGTATGGGCA AGCTGCGTCA ACAAATGCTG
ACGACGGCGG CGGTAGCTTG A
|
|---|
| Protein sequence | MKELAIASRD LVSPDGLAGY LRFVNAQPLL RPEEERDLAR RLRDHGDVDA AKDLVLSHLR
FVVRVARGYR GYGLQEADLI QEGNIGLMKA VKRYDPDHGV RLVSFAVHWV KAEIHEFILR
NWRIVKVATT KAQRKLFFNL RSSRSHTGWM SGEESAAMAD DLGVTQAQVL EMEGRMSGYD
YSLNLEPDEE REGGRAPDLA DPTGSPIEQL VERDWDQQQH RALHTALSAL PQRDRYIIEN
RWLSDDPKTL QVLGDELGVS AERVRQLEKS SMGKLRQQML TTAAVA
|
|---|
| |