Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2326 |
Symbol | |
ID | 6878320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 2303931 |
End bp | 2305367 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642790185 |
Product | type II and III secretion system protein |
Protein accession | YP_002220734 |
Protein GI | 198284413 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.434108 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAAAT GGATGATGAG CAGTTTGGCG GTGGCGACCC TGGCGGCGCT GGGCTCCCAG GGCGCCTGGG CGGAAGGGCC GGCGGCGGAG GGCGGCGCCC ATCCCTCCTG GGCCGCGCAC CAGAGCGGCG GGTACCGCGC GCTGAATATC CCGGTGGGCA CCCAGCAGAC CCTGAGTTTC ACCGAGCCGG CCTACCGGGT GGCCGTCGGC AACCCGAAAA CGGCATCGGT GGCGCCGCTG CCGCGTTCCG GCGGCCGGCA GTTTCTGATC ACCGGCCTCA GTACCGGCAC CACCAGCCTG CTGGTCTGGA ACCTCGGCCA CAAGACGCCG AAGGTCTGGC AGCTTCAGGT CAGCGTGCCG GTGCCCGGAG CGCCTCTGGC GGCGCCGGCG CCGGGCATGC CCGAAGTGCG CGCCCAGGGC GATGCCGTCA CCCTGTCCGG CGCGGTGGCG GACCAGGTGA AACACGAAGC GGCCCTGGAA GCGGCGGCGC TGGCCGCCGG CAAAACCGGC AAGGTCATCG ACCAGTCGGT GATTCCGGTG GATGACGAGG TGCAGGTCGG CGTCAAGGTG GTGGAGTTCA GCAAGGCGCA GTTGAAGAAT GTCGGTATCA ACATTTTCTC CAGCACCGGC GGTTTCAGCC TGGGCACCTT CGGTCCCTCC ACCCTGACCT CGGCCAATTA TCCGGTATCC CTGGCGAGCG GCGGCCCGGG GGCGCTGGCG ATCACCGGCG TGGCGCCCTT CACCCAGGCC TTCAATCTGG TGGGCGGGGT CGGCAACAGC GGCCTGAGCA GCTACCTCAG CTTGCTGGAG GGCAACAATA TCCTCCGGGT GCTGGCGGAA CCGACGCTGG TGGCGATGAA CGGCCAGCAG GCGAGCTTCC TCGCCGGTGG CGAAATCCCG ATTCCCGTAC CGCAAAGCAG CGGGGTCGGC ACCCCCACCA TCACCATCCA GTACAAAAAA TATGGCGTGC AGCTCGATCT GACCCCCACC ATCCTCAGCG CCCACCGGAT CGCCCTGCAT GTGGCGCCGT CGGTCAGCTC TCTCGACTAT ACCAACGCCA TCACCCTCAA CGGCTATTCG GTGCCCGCCC TGCTGGTCCG TCAGGCCGAC ACTACCGTCA CCCTCGGCAA TGGCGAGAGT CTGGTCATCG GCGGTCTGGT GGATCGCCAG ATGCAGCAAA ACATCAGCAA AGTGCCGATC CTGGGGGATC TCCCCATACT GGGCGCCTTC TTCCGTTCCA TTCAGTATTC CAAGCAGGAC ATGGAACTCG CCATCATCGT CACCCCGCGT CTGGTGCGCC CCATCGCCGC CGGAGCCAAG CTCCCGCCCT TGCCGGGAGC GGCCTTTGCC CATTCCCGCT TCAATCTGGG CAAGGCGGTA TTGTTGCCCG GGTCGGACTA TAACCAGCCC GACAACGGTC CCGGATACAG TCAATGA
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Protein sequence | MRKWMMSSLA VATLAALGSQ GAWAEGPAAE GGAHPSWAAH QSGGYRALNI PVGTQQTLSF TEPAYRVAVG NPKTASVAPL PRSGGRQFLI TGLSTGTTSL LVWNLGHKTP KVWQLQVSVP VPGAPLAAPA PGMPEVRAQG DAVTLSGAVA DQVKHEAALE AAALAAGKTG KVIDQSVIPV DDEVQVGVKV VEFSKAQLKN VGINIFSSTG GFSLGTFGPS TLTSANYPVS LASGGPGALA ITGVAPFTQA FNLVGGVGNS GLSSYLSLLE GNNILRVLAE PTLVAMNGQQ ASFLAGGEIP IPVPQSSGVG TPTITIQYKK YGVQLDLTPT ILSAHRIALH VAPSVSSLDY TNAITLNGYS VPALLVRQAD TTVTLGNGES LVIGGLVDRQ MQQNISKVPI LGDLPILGAF FRSIQYSKQD MELAIIVTPR LVRPIAAGAK LPPLPGAAFA HSRFNLGKAV LLPGSDYNQP DNGPGYSQ
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