| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2318 |
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| Symbol | |
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| ID | 6878312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 2294896 |
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| End bp | 2296284 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642790177 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_002220726 |
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| Protein GI | 198284405 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.901634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGA TTCGTGTTTT GGTCTGGGAA GGACAGCATG ATTTCGCCAA GCGTCTGGAA
CGCTGTCTGA GTCAACATGC CGACGCCGAG GTCATCCGCT ACGATGACGA GGTGGATCAT
CCGTCCAGCA TGGAAGCCAT GGACGTGGAT ATCGTTTTCA TAAGCACCAC GGCGCTGCGA
CGTTATGAAA AAAACCACCT TGCCTGGAAA CGGATAGAGG GCGTACCGGT CATCTGGGTG
GGTAGCGGCG AGCAGAGCAT CTATGCGACG ACGCCGCTAT CCGAACGGGT CGTGTTGCCC
GCCTACTTCA ACTGCGCGAG CCTGTCTGCC GTACTGAAAC ACACCCTGCA TACGGTGACG
CAGGGCGCAA CCGACCGGCC GCTACCGGGG GATGACGCCA TCTCGCTCAC GGAATTGCCC
ATGGCCAAAG ATGGGGATTT CGTCTATCAG TCGCCCTGTA TGCACCGCCT GGTGGGTAAC
GCCCGTCTTT ATGGCGCATT GTCGGTGAAT GTGCTGATCC GCGGTGCCAG CGGTACCGGA
AAGGAATACG TCGCCCGTCT GGTGGCGGAT TCCCACCCCG AGTACCGCTC TGGTCCCTTT
GTGCCGGTGA ACTGCGCGGC CATTCCCGAT GCGCTTTTCG AGTCGCTTTT TTTCGGGCAT
GTCCGGGGCG CATTTACGGG TGCCGTACGC GATCACCCGG GTTTTTTGCG CGAGGCCAAT
AACGGCACCC TGTATCTGGA CGAAATCGGC GACCTGCCTT TTTATCAGCA GGTGAAGTTG
TTGCGCGCGC TGGAGGACGG GGTGATCCAC CCGGTGGGCA GCAACGAGAC GATGCGGATC
AATTTCCGCC TGGTCACCGC CACCAACCGA CCGCTCATCA ACATGATCCG GGAAGGGACC
TTCCGGCTGG ATCTCTATCA TCGCATCAGT GTGGTTGAAC TCTACATACC CACTCTGCAG
GAACGTGGTG GGGACGAAAA GTGGCTGCTG TTCACCCACG CTTTCCGGTT GGCCCTGGAA
AAGTTTTCCG GCGATGATAT CGCCTCTCCG GAACTGCCAG GCTGGCTCAA GGACTGGGTT
TATACTTCCC AGTTTCCGGG TAACGTGCGT GAATTATTCA ACCGGGCGGC GCGTCTTGCC
GCCTTTTACC TCGGCCATGG GGTTTTGGAG CAGACCGAAT GCATGCATCT TTTGCGCGCC
GGAGAAATCG ACTGCGAAAC CACCGGGGTC TGCGCTCCGC CGGACTTTTC AACCAGGGCG
GAGGAGCGGA GCCAGGTCCT GGACGCGCTG GAAAAAAACC AGTGGCGTCG ACTGGAAACG
GCTGAGGCAC TGGGCTGGAG CCGCAAGACG TTGTGGCTCA AAATGAAAAA ATACGGATTA
TCTGGATAA
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| Protein sequence | MNMIRVLVWE GQHDFAKRLE RCLSQHADAE VIRYDDEVDH PSSMEAMDVD IVFISTTALR
RYEKNHLAWK RIEGVPVIWV GSGEQSIYAT TPLSERVVLP AYFNCASLSA VLKHTLHTVT
QGATDRPLPG DDAISLTELP MAKDGDFVYQ SPCMHRLVGN ARLYGALSVN VLIRGASGTG
KEYVARLVAD SHPEYRSGPF VPVNCAAIPD ALFESLFFGH VRGAFTGAVR DHPGFLREAN
NGTLYLDEIG DLPFYQQVKL LRALEDGVIH PVGSNETMRI NFRLVTATNR PLINMIREGT
FRLDLYHRIS VVELYIPTLQ ERGGDEKWLL FTHAFRLALE KFSGDDIASP ELPGWLKDWV
YTSQFPGNVR ELFNRAARLA AFYLGHGVLE QTECMHLLRA GEIDCETTGV CAPPDFSTRA
EERSQVLDAL EKNQWRRLET AEALGWSRKT LWLKMKKYGL SG
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