| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2286 |
|---|
| Symbol | |
|---|
| ID | 6878280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2257757 |
|---|
| End bp | 2258323 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642790145 |
|---|
| Product | deoxycytidine triphosphate deaminase |
|---|
| Protein accession | YP_002220694 |
|---|
| Protein GI | 198284373 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0717] Deoxycytidine deaminase |
|---|
| TIGRFAM ID | [TIGR02274] deoxycytidine triphosphate deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.777685 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000350078 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA AATCCGATCG CTGGATCCGT CACATGGCGG AAGAACACGG GATGATCGAA
CCCTTTTCAC CGCGGCAGGT GCGGCACGTC GAGGGAAATT CCATTATCTC CTACGGCCTG
TCTTCCTATG GTTACGATAT CCGTTGCGCC GGAGAGTTCA AAGTCTTCAC CAATGTCCGT
AGCGTGATTG TCGACCCGAA GAATTTCAGT GAACATTCTT TTGTCGATTT TACTGGGGAT
ACCTGCATTA TCCCACCGAA TTCTTTCGCC CTGGCGCGCA CCTTGGAATA CTTTCGTATC
CCGCGTAATG TGCTGACCAT TTGTCTGGGT AAATCCACCT ATGCCCGTTG CGGTATCATC
GTCAATGTCA CGCCTTTTGA GCCGGAGTGG GAAGGCTATG TGACCCTGGA ATTCTCCAAC
ACGACGCCCT TACCCGCGAA AATCTATGCA AATGAAGGCG TGGCGCAGGT GCTCTTTTTG
GAGTCGGACG AGGTCTGCGA AGTGTCTTAT GCCGACCGCG GCGGCAAGTA TCAGGGCCAG
AGTGGCGTAA CCCTGCCGAA GGCTTGA
|
|---|
| Protein sequence | MSIKSDRWIR HMAEEHGMIE PFSPRQVRHV EGNSIISYGL SSYGYDIRCA GEFKVFTNVR
SVIVDPKNFS EHSFVDFTGD TCIIPPNSFA LARTLEYFRI PRNVLTICLG KSTYARCGII
VNVTPFEPEW EGYVTLEFSN TTPLPAKIYA NEGVAQVLFL ESDEVCEVSY ADRGGKYQGQ
SGVTLPKA
|
|---|
| |