Gene Lferr_2254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2254 
Symbol 
ID6878247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2228869 
End bp2230122 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content57% 
IMG OID642790114 
ProductNADH dehydrogenase subunit D 
Protein accessionYP_002220664 
Protein GI198284343 
COG category[C] Energy production and conversion 
COG ID[COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 
TIGRFAM ID[TIGR01962] NADH dehydrogenase I, D subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000154911 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCGAAA TCAATAACTT CACCATGAAC TTCGGGCCGC AGCATCCGTC TGCCCACGGT 
GTGCTGCGTC TGGTACTGGA ACTGGACGGT GAAGTGATCG AGCGCGCCGA TCCCCACATC
GGTCTGCTGC ACAGGGCTAC CGAGAAGTTG GCGGAAAACA AGACCTATCT GCAGAACCTG
CCTTATATGG ATCGGCTCGA TTATGTGTCG ATGCTGTGCA ACGAACACGC GTACTGTCTG
GCGGTAGAGA AACTGCTCGG CGTTGAAGTG CCGGTTCGTG CCCAGTATAT CCGTACCCTG
TTCGACGAGA TTACCCGCAT TCTCAATCAT CTGCTCTGGT TGGGTGCCTA TGCCCTGGAC
GTCGGTGCCA TGAGCGTCTT TCTTTACTGC TTCCGCGAGC GGGAAGACCT CATGGATGTC
TATGAAGCGG TATCCGGTGC GCGCATGCAT GCCGCCTACT ATCGCCCGGG GGGGGTGTAC
CGCGACCTAC CTGCCCAGAT GCCACAGTAC CAGCCGTCTC CTTACCGTGA CGCCCGGCGC
CTGCAAGAGC TCAATGCCAA CCGTCAGGGC AGCATGCTGG ATTTCATAGA GGACTTCGCG
CGCCGTTTCC CCACCTACGT GGACGAGTAT GAAACCCTGC TGACGGACAA CCGGATCTGG
AAGCAGCGCA CGGTGGGTAT CGGTGTGGTG GGGCCGGAAC GGGCCATTCA ACTGGGCTTC
ACTGGCCCCA TGCTGCGCTC TTCCGGTGTG GCTTGGGATC TGCGGCGTAC CCAACCCTAC
GCAGCGTATG CCGATCTGGA TTTTGATATC CCGGTGGGTA AAACCGGGGA CTGTTATGAT
CGCTATCTGG TCCGCGTCGC GGAGATGCGG CAGAGCAACC GGATCATTGT CCAGTGTGTG
GATTGGCTGC GCAAGAATCC TGGCCCGGTG ATTACCGATG ATTTCAAGAT TGCCGCGCCG
TCCCGCGAAG AGATGAAAAC CAGCATGGAG GCGTTGATTC ATCACTTCAA GCTATTCTCC
GAAGGGATGG CGGTTCCTGC GGGTGAAGTC TATGCCGCGG TGGAGGCTCC CAAGGGGGAA
TTTGGCATTT ATATGATTTC GGATGGTGCC AACAAACCCT ACCGGATGAA AATCCGGGCA
CCCGGATTCC CGCATCTCGC CGCTATGGAC GAGATGGCCC GGGGACATAT GATCGCGGAC
GTGGTGGCTA TTTTGTCCAC CATGGACATT GTTTTTGGCG AGATCGACAG GTAA
 
Protein sequence
MPEINNFTMN FGPQHPSAHG VLRLVLELDG EVIERADPHI GLLHRATEKL AENKTYLQNL 
PYMDRLDYVS MLCNEHAYCL AVEKLLGVEV PVRAQYIRTL FDEITRILNH LLWLGAYALD
VGAMSVFLYC FREREDLMDV YEAVSGARMH AAYYRPGGVY RDLPAQMPQY QPSPYRDARR
LQELNANRQG SMLDFIEDFA RRFPTYVDEY ETLLTDNRIW KQRTVGIGVV GPERAIQLGF
TGPMLRSSGV AWDLRRTQPY AAYADLDFDI PVGKTGDCYD RYLVRVAEMR QSNRIIVQCV
DWLRKNPGPV ITDDFKIAAP SREEMKTSME ALIHHFKLFS EGMAVPAGEV YAAVEAPKGE
FGIYMISDGA NKPYRMKIRA PGFPHLAAMD EMARGHMIAD VVAILSTMDI VFGEIDR