| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2226 |
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| Symbol | |
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| ID | 6878217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 2200975 |
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| End bp | 2202294 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642790084 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_002220636 |
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| Protein GI | 198284315 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.676437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATTG GGCTGGATGT CGGCAGTGTC CTCAATATTC AGCAGAATCC CATGGTGCTG
ATCAATCGGG ACTATCGGAT TATAGCCGCC AACCGCGCCT ATCAGGATGC CTATGGCGTG
CGTGCGGATG AGGTGGTCGG GAAGTGTTGC CATGAAATCT CCCATCACTC CCCGGTACCT
TGTCACATGT GTGGAGAAGA TTGTCCTCAT CAGGCGGTGT TCAACACCGG AGAAGCGCAT
GAGGTGCGTC ACATTCATTA TGACCACCAG AATCATGCCG AGCATGTGCG GATTCGCGGC
CATGCCATCA AGGATCAGGA CGGTAATGCG TATCTGGGGG AGGAAATCAT CCGTCTCCCG
CGCCAGGAGG AGGAAATCAC CTGCGGTGAG TTGCGTATGG TAGGACGCTC ACCCGCCTTT
ATGCGCTGTC TGCATCATCT AGAAATGGCA GGGCGGACGG ATGCCAGTAT CCTGCTGTCC
GGTGAGAGCG GGGTGGGTAA GGAGCTGGCC GCCAACGCTC TGCATCAGTT CTCGGTGCGG
GCGAGTGGTC CTTTCATCAC CGTCGATTGT GCTTCCTTGC CGGAGACCCT TTTTGAAAGC
GAGATACTGG GCCACGAGCG GGGAGCCTTC ACCGGTTGTC TCGGGCGCAA ATGCGGGCTG
TATGAAATGG CCCATGGCGG CACTCTGTTT CTGGATGAGG TCGGTGAACT ACCGCTTGCC
ATGCAGGCCA AGCTGCTGCG GGTACTGGAA ACGGGTAGCT TTCGGCGTCT GGGCGGAGCG
GAAACTCTGC ATGCAGACGT GCGCGTAGTG GCCGCCACCA ATCGCAACCT GCTGGAGATG
GCGACGCAGC GGGCCTTTCG TGAAGATCTC TATTATCGTT TGGCGGCCAT TACCATTGAT
TTGCCGCCGT TGCGTGAGCG TCGCGAAGAT ATCGCGGGTA TCGCCAAAGT TTTGCTGGAT
CGCATTGGCA GGAACTGGGG CGGGGGTTGG AGCTTGTCCA AGGAGGCGGA GATTCGTCTG
TGTGCCTACG ATTTTCCGGG CAACGTGCGG GAGTTGCGCA ATATTCTGCA AAAGGCGGCG
GCGCTGGCGG ATGGCCCGGT CATTCAGCCT CGGCATCTGG ATTGGGCGGT ATCGCGCAAA
GCAGCCCTGC CGACAGCAGA GCGACCGTCG CTCCCTGGGC CGGGGAAGAC TGGACTGCAC
CCTGACAACC TCGACGAATT GTTGCGTCGC TATCATGGTA ACAGGCGCCA GGTGGCAGAT
GTGCTGGGTG TTTGTGAGCG AACGGTGTAC CGCTGGTTGC AGCGCCAGAC CGCTGGATAA
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| Protein sequence | MSIGLDVGSV LNIQQNPMVL INRDYRIIAA NRAYQDAYGV RADEVVGKCC HEISHHSPVP
CHMCGEDCPH QAVFNTGEAH EVRHIHYDHQ NHAEHVRIRG HAIKDQDGNA YLGEEIIRLP
RQEEEITCGE LRMVGRSPAF MRCLHHLEMA GRTDASILLS GESGVGKELA ANALHQFSVR
ASGPFITVDC ASLPETLFES EILGHERGAF TGCLGRKCGL YEMAHGGTLF LDEVGELPLA
MQAKLLRVLE TGSFRRLGGA ETLHADVRVV AATNRNLLEM ATQRAFREDL YYRLAAITID
LPPLRERRED IAGIAKVLLD RIGRNWGGGW SLSKEAEIRL CAYDFPGNVR ELRNILQKAA
ALADGPVIQP RHLDWAVSRK AALPTAERPS LPGPGKTGLH PDNLDELLRR YHGNRRQVAD
VLGVCERTVY RWLQRQTAG
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