| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2013 |
|---|
| Symbol | |
|---|
| ID | 6878004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2015946 |
|---|
| End bp | 2017418 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642789885 |
|---|
| Product | UbiD family decarboxylase |
|---|
| Protein accession | YP_002220437 |
|---|
| Protein GI | 198284116 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.920349 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACC GTGACCTTCG CGCCTTTTTG GCCGTTCTCG AAAAGCGCGA TCTATTGCGC
CGGCTGAGCG TGCCCGTCTC TCCCAAACTG GAGATGACGG AAATCTGTGA CCGAACCTTG
CGGGCGGCAG GGCCGGCCAT TCTGTTTACC CAGCCCATCG GCTACGACAT GCCGGTGCTC
GGCAACCTGT TCGGGACGAC GGAACGCGTG GCGCTGGGGA TGGGGGGCGA ATCCCTGGCA
GATCTCCGGC AGATCGGTCA GTTACTGGCC TATCTCAAGG AACCTGACCC GCCCCGCGGG
CTGCGCGACC TCTGGGACAA ATTGCCCACC CTGCGCAAGA TCCTGTACAT GGCACCGACC
ACCCTGAGTC GCCCTCCCTG CCAGGAAATC ATCCTGCGCG GAGATGAGGT CGACCTTGCC
GCCCTGCCGG TGCAGACCTG CTGGCCAGAA GACGCTGCGC CGCTCATGAC CTGGGGCCTG
ACCGTGACCA AGGGGCCACA CAAGCGGCGG GCCAACATGG GTATCTACCG GCAACAGGTC
ATCGGTCGTA ACCGGGTGAT CATGCGCTGG TTGGCGCACC GGGGGGGGGC CCAGGACCTG
CGTGAATTCC AGAAAGCGCA GCCGGGCGAG CCATTCCCCG TTGCCGTGGC CTACGGCGCC
GATCCGGCAA CCATTCTGGC GGCGGTCATT CCTATCCCCG ATACCATTTC CGAGCACCAA
TTCGCCGGCC TGCTGCGTGG CGGGCGTACT GAGCTCGCCA ATGCCCTGAG CGTTCCGCTA
CAGGTGCCCG CGCGCGCCGA AATCGTCCTG GAAGGGCATA TTTACCCGGA TGACATGGCG
GTGGAAGGTC CTTTTGGAGA CCACACCGGC TACTACAATG AGGCCGAGCG TTTTCCGGTA
TTCACCGTGG AAACCATCAG CCACCGCGAA AATCCTGTTT ACCACAGCAC CTACACCGGC
CGGCCCCCCG ATGAACCGGC CATACTGGGT GCGGCCCTCA ACGAAGTCTT CGTGCCCCTG
CTGCAGAAAC AATTCCCGGA AATCGTGGAT TTTTATCTGC CGCCGGAGGG CTGTTCCTAC
CGTCTGGCCG TTGTCAGTAT CCGCAAGGGT TACCCCGGTC ATGCAAAAAG AGTCATGTTC
GGTATCTGGG GCTTTTTGCG ACAGTTCATG TACACCAAGT TTATCATCGT GGTGGACGAA
GACATCGATG TGCGCCGTTG GGAAGATGTG ATCTGGGCGA TGACCACCCG GATGGACCCG
GTGCGCGACA TTACCCCCGT CGAAAATACA CCCATCGATT ATCTCGACTT TGCTTCGCCG
GTTGCCGGAC TTGGTGGTAA AGTGGGTATG GACGCCACCA ATAAACTGCC CGGAGAGACT
GCCCGGGAAT GGGGCCGCCC CATCCAGATG ACCGCCGTGG TGCGCCAACG AGTGGATGAC
CTGTTGCTGG CGCTGGATCG GCCGCTGTTC TAA
|
|---|
| Protein sequence | MSYRDLRAFL AVLEKRDLLR RLSVPVSPKL EMTEICDRTL RAAGPAILFT QPIGYDMPVL
GNLFGTTERV ALGMGGESLA DLRQIGQLLA YLKEPDPPRG LRDLWDKLPT LRKILYMAPT
TLSRPPCQEI ILRGDEVDLA ALPVQTCWPE DAAPLMTWGL TVTKGPHKRR ANMGIYRQQV
IGRNRVIMRW LAHRGGAQDL REFQKAQPGE PFPVAVAYGA DPATILAAVI PIPDTISEHQ
FAGLLRGGRT ELANALSVPL QVPARAEIVL EGHIYPDDMA VEGPFGDHTG YYNEAERFPV
FTVETISHRE NPVYHSTYTG RPPDEPAILG AALNEVFVPL LQKQFPEIVD FYLPPEGCSY
RLAVVSIRKG YPGHAKRVMF GIWGFLRQFM YTKFIIVVDE DIDVRRWEDV IWAMTTRMDP
VRDITPVENT PIDYLDFASP VAGLGGKVGM DATNKLPGET AREWGRPIQM TAVVRQRVDD
LLLALDRPLF
|
|---|
| |