Gene Lferr_2005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2005 
Symbol 
ID6877996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2005111 
End bp2006289 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content51% 
IMG OID642789877 
Productanticodon nuclease 
Protein accessionYP_002220429 
Protein GI198284108 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.924608 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.799191 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCCGG GCCAGCCCTT CGCCGACTTG CCAAAGCTGG CCGCCCATTT GCGCGGCGAG 
CTGGAGAACA AGAAAGCCAT CCTGCTTTAT GCCTACAACG GCACCGGTAA GACGCGGCTG
TCGATGGCCT TCAAGGACAT CGGCAAGCAA GGTGATGCTC GCGACACACT CTACTTCAAC
GCCTTCACCG AAGACCTGTT CCATTGGGAG AATGACTTTG AAGGCGATAA CGACCACAGG
CTCACACTCA ATGCGGCGTC GCGCTTTTTC GCCGGCTTAG CCGAGTTGGA AATGGACAAC
CGCATCCGCC CGCTGCTGCA ACGCTATGCG GATTTCGATT TCCGCATCGA CTACGAGAAA
TGGGATGTTG TTTTTTCGCG AAGAGTCAAA AATGAGAACT ATGTTCCAGG CTCTAAAAAA
CTCATGCAAA GGTTTGCGTT TGAGGAAAAG ACCCATATCA AGGTCTCGCG CGGTGAAGAA
AACATCTTTG TCTGGTGCTT CTTCCTCGCC ATCGTGCAAC TGGCGCTAGA TGGTGCGGAG
GCTTATCAGT GGGTGAAATA TGTTTACATC GACGACCCGA TTTCATCGTT GGATGAGCAC
AACGCAATTG CGGTAGCCAA CCATCTAGCG CAATTGCTCA AACGGCCGGG CAGTAAGCTC
AAGACGGTGA TCTCGACGCA CCATACCTTG TTCTTCAACG TGCTGTGCAA CGAATTTAAA
GGGAAGGCGT TCCGATATTT TCTGAGAAAT GCCCCCACTG GCAGTTATTC GCTAGTAGAT
ACATCTGCCA CGCCATTCCT TCACCATTTG GCGAGCATTA TTGAGTTAGA TGAAGCACAA
AAGAGTGGTG CACTCTATAC ACATCACTTC AACATGATGC GCAGAGTGAT GGAGCAGACT
TCCATCTTCT TGGGGCTTGA GGACTGGGCC GAATGTATCA GGGTGGCAGG CGATCTAGAC
GAAGCGCTGT CCAAGCGGAT GATTGACCTT ATGAGTCACG GCGATTATTC GCTTTACGAG
CCACGAGAAA TGATGGAAGA GAATAAAGCG CACTTTCGGA GAATTTTCCG CGCCTTCCTG
AATCGCTACC CCTTCAATCC GAAACTGTTT CCTGTAGCAC CCGAGGATGA CAATGTCGGC
GAAGAGCCGA CTCTCTTGCA ATGGGGAGAA AACCGATGA
 
Protein sequence
MKPGQPFADL PKLAAHLRGE LENKKAILLY AYNGTGKTRL SMAFKDIGKQ GDARDTLYFN 
AFTEDLFHWE NDFEGDNDHR LTLNAASRFF AGLAELEMDN RIRPLLQRYA DFDFRIDYEK
WDVVFSRRVK NENYVPGSKK LMQRFAFEEK THIKVSRGEE NIFVWCFFLA IVQLALDGAE
AYQWVKYVYI DDPISSLDEH NAIAVANHLA QLLKRPGSKL KTVISTHHTL FFNVLCNEFK
GKAFRYFLRN APTGSYSLVD TSATPFLHHL ASIIELDEAQ KSGALYTHHF NMMRRVMEQT
SIFLGLEDWA ECIRVAGDLD EALSKRMIDL MSHGDYSLYE PREMMEENKA HFRRIFRAFL
NRYPFNPKLF PVAPEDDNVG EEPTLLQWGE NR