| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1994 |
|---|
| Symbol | |
|---|
| ID | 6877984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1993438 |
|---|
| End bp | 1994766 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642789865 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_002220418 |
|---|
| Protein GI | 198284097 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.310747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGGC AGTCTGATAC GGGTTTCTCA AGGCGGCAGT TCCTGCGACA GGCCGCGCTG
GGCGGCGTAT TGTTGTGCGG CTGGAATATG GCCGCCGCCG CGCAGCTCCG TGGGCTGCGG
GTGGGCCGCC ACGGGCAGGG TGTGCGCCTG GTCTTTGATC TCAACCGGCG TTTGACGGCT
GCACCGGTGA TCCGTAGTGT GGGTGAAGTG CTGCATATCG AGTTGCCCGG CATACAGCAT
TGGCTTGGCC GTCCCGTGGT GCCTGCGTTG GGACCACTGC AGGGCGGAGC GGAGATGAAC
GAGAGCGCCG CCGGGGTGGT GCTGCGCTTG CCTTTGCGGG AAGCGGTACG CTGGCATAGT
TTCTCTCTGG GCCCCGGTGG TGGTGCTTCA CATCGCCTGG TGCTGGACTT GCTTCCCGTC
GCTGGAACTG CGGTGGAGTC CTCCCGTTCG CATCCTGTTG CCGGGGCGGG ACGGCCCATT
GTGGTCTGTC TGGATCCCGG CCATGGCGGC CACGATCCGG GTGCCATCGG CGCCAGGGGG
ACCCGTGAGA AGGATGTCGT GCTGGATGTT GCTCTGTCTC TGGCCCGACT GATTCGCAGC
ACTCCCGGAA TGCGTCTGGT CATGTCCCGT GATACCGATC GTTATGTACC GCTCATGGAT
CGTATGCACC TGGGCTTGGC GCAGCGTGCC GACCTCTTCG TCTCCATTCA TGCGGACGCC
TTTCCGGAGC GAACAGTGAG CGGTTCGACG GTCTGGGCGC TGTCGCAAAC GGGGGCGACC
AGTGCGGCGG CCCGCTGGCT GGCCAGAACG CAGAATGCCG CTGATCCTCT CCTCGGCGAC
GTACAATCGG GGGTGCATGA TCTTATGCTC AACGAGGTAC TCATTAATAT GACCCAGACG
GCTGCCATGA ACGCGGCGGC TGCTGCTGCG GATATGATGA TTCGCGGGTT GGCCGGGGTG
GAGGATCTGC ACAACGCTGC CGTGCAGCAC GCCAATTTCG TAGTGCTGCG CGCCCCGGAT
GTGCCGTCCA TGCTGGTGGA GACTGCCTTT ATTTCCAACC CGCAGGAGGA GCAACGCCTG
CGTGATCCGG CTTTCCGTCA ACTGCTTGCG CGCACCATGC ATGATGCGGT CCTCGCCCAT
TTTGTGAACG CACCACCAGC GGATAGCGCG TGGTCTGCGA CGCGGCATGT GCTGGGAAAA
GCGGAAAATC TGGCGGATGT GGCGGACCGT TACGGGCTGA GCGTAGAGGC TTTGCGTCTG
GCCAACAACC TGCCGCACGG AGAGGGTCAG CCCGGAGTGC ATCTGCGTGT TCCCATCATG
GGAGCCTGA
|
|---|
| Protein sequence | MARQSDTGFS RRQFLRQAAL GGVLLCGWNM AAAAQLRGLR VGRHGQGVRL VFDLNRRLTA
APVIRSVGEV LHIELPGIQH WLGRPVVPAL GPLQGGAEMN ESAAGVVLRL PLREAVRWHS
FSLGPGGGAS HRLVLDLLPV AGTAVESSRS HPVAGAGRPI VVCLDPGHGG HDPGAIGARG
TREKDVVLDV ALSLARLIRS TPGMRLVMSR DTDRYVPLMD RMHLGLAQRA DLFVSIHADA
FPERTVSGST VWALSQTGAT SAAARWLART QNAADPLLGD VQSGVHDLML NEVLINMTQT
AAMNAAAAAA DMMIRGLAGV EDLHNAAVQH ANFVVLRAPD VPSMLVETAF ISNPQEEQRL
RDPAFRQLLA RTMHDAVLAH FVNAPPADSA WSATRHVLGK AENLADVADR YGLSVEALRL
ANNLPHGEGQ PGVHLRVPIM GA
|
|---|
| |