Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1970 |
Symbol | |
ID | 6877958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1966393 |
End bp | 1968288 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642789839 |
Product | RNA polymerase, sigma 70 subunit, RpoD |
Protein accession | YP_002220394 |
Protein GI | 198284073 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.53576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGACG GTGAGAGTGT AGTGGATAAT GAATCTCAGC GGTCTGAGCT GAAGCGGCTT ATTGCGCGTG GTAAAGAGCA AGGCTACCTG ACCTATCGCG AGATCAATGA TCATTTGCCG GAAGAGGTTT TCGACCCCGA GCAGATGGAA AATGTCATCT CCATGATCAA TGACATGGGT ATTGAAGTCT TTGAGGAGGC TCCGGACGAC GATACCCTGC TGATGGATGG GGAAGGTGGT ACCGTAGTCG CCGCTCAGGA AGCGGAAGAA GCGGCAGAGG AAGCCCTGGC CGTGGTCGAG GCGGATATCG GGCGAACCAG TGATCCGGTG CGCATGTACA TGCGCGAGAT GGGCAGCGTG GAACTGCTCA CGCGTGAAGG CGAAATCGAA ATTGCCCGGC GTATCGAAGA TGGTCTGATG CAGGTATTGC GCGCTGTATC GACCTGCCCG ACGACCATCT CTCTTCTTCT GGACGCCGCG GCTCGGGTGG AGCGCGGCGA GACGCGCCTG GATGAAGTGG TCGACGCCTT TATTGATCTT AGCGCGCTGG ATGCAGAAAC CGTCAGTGAG GCAGAAGAAA GCGTGCTGGT GGAAGGCGAC GATCTGGACG TCGATGAGGA TGAGGAAGAA TCCGAAGACG GTGATATCGA AGTCGTAGAC AAGGGGCCAC AGCTCGAAGA TGCACTGGAA CGTTTTGCGG TCATCCGTGC TGCGTATACC GCGCTGCTGG CCAGCCATGC CGAGGGGGAG ATGCATGGTG AAAGTTATCA GCGGCAGCGC CGGGAGCTCG CCGAACGTTT CCTGGAAATC AAACTCAACG GTCGTCAGAT TGACGTCATG ACCGACGCCC TGCGCGGGCT AACGGAAGAG GTGCGTCAGT GCGAACGGGA GTTGATGGAA CTGTGCATTG AACGTGCGCG CTTCCCGCGC AAAGAATTTG TGCGCAGTTA TCCCGGTCAT GAGGGTGATA TCGGCTGGAT TGATCAGCAA ATCGCCGCTG GTCATGCCTA TAGTACCCGT TTGGTTGAGT TTCGTGATGA TATCGTGGCG ATCATGAAAC GCTTGGCGAA TATTGAGAAG CGTGCCGGTT TGCCGATTGC CGAGATCAAA GAGGCCAGTC GCCTGATGTC CATTGGTGAG GCCAAGGCGC GGCGTGCCAA GAAGGAAATG GTGGAGGCCA ATCTGCGTTT GGTGATCTCT ATCGCCAAGA AGTATACCAA TCGTGGCCTG CAGTTCCTGG ATCTGATTCA GGAAGGAAAT ATCGGTCTGA TGAAAGCGGT GGACAAGTTC GAATACCGAC GTGGCTACAA ATTCTCTACT TATGCGACTT GGTGGATACG CCAGGCCATT ACGCGGAGTA TTGCGGATCA GGCGCGGACC ATTCGTATCC CGGTACATAT GATCGAAACC ATAAACAAAC TCAATCGAAT CAGTCGCCAG ATGCTCCAGG AAATGGGACG TGAACCGTCG CCTGAAGAGT TGGCAGAACG GATGGAAATG CCCGAGGATA AAATCCGCAA GGTGCTCAAA ATTGCCAAGG AGCCTATCTC CATGGAGACG CCCATCGGTG ACGATGAAGA TTCGCACCTG GGCGACTTCA TCGAAGACCG GAATGTGACG GCGCCAGCGG ATTCTGCCGT TAACGCCGCC ATTCGCGAAG TGGTCGAGGA GTTGCTTGAT AATGGCCTGA CAGCGCGGGA AGCCAAGGTG TTGCGTATGC GTTTTGGCAT CGGGATGAAT ACCGACCACA CGCTGGAGGA GGTCGGCAAG CAGTTTGACG TTACTCGTGA GCGTATCCGC CAGATTGAAG CCAAGGCGCT GCGCAAACTG CGTCATCCCT CTCGATCGGA GCGGTTACGT AGTTTTGTGG ACGGTGAAGT GACGATTCCA TCGTGA
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Protein sequence | MRDGESVVDN ESQRSELKRL IARGKEQGYL TYREINDHLP EEVFDPEQME NVISMINDMG IEVFEEAPDD DTLLMDGEGG TVVAAQEAEE AAEEALAVVE ADIGRTSDPV RMYMREMGSV ELLTREGEIE IARRIEDGLM QVLRAVSTCP TTISLLLDAA ARVERGETRL DEVVDAFIDL SALDAETVSE AEESVLVEGD DLDVDEDEEE SEDGDIEVVD KGPQLEDALE RFAVIRAAYT ALLASHAEGE MHGESYQRQR RELAERFLEI KLNGRQIDVM TDALRGLTEE VRQCERELME LCIERARFPR KEFVRSYPGH EGDIGWIDQQ IAAGHAYSTR LVEFRDDIVA IMKRLANIEK RAGLPIAEIK EASRLMSIGE AKARRAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKLNRISRQ MLQEMGREPS PEELAERMEM PEDKIRKVLK IAKEPISMET PIGDDEDSHL GDFIEDRNVT APADSAVNAA IREVVEELLD NGLTAREAKV LRMRFGIGMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL RHPSRSERLR SFVDGEVTIP S
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