Gene Lferr_1969 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1969 
Symbol 
ID6877956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1964912 
End bp1965838 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content52% 
IMG OID642789837 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002220393 
Protein GI198284072 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACTTG AACTCCGCCA TCTCCGTTAC TTCATCGCAG TGGCTGAAGA TCTGCATTTC 
AGCCGCGCGG CAGAGCGTTT GGGCATTTCC CAGCCGCCGC TCAGCCAACA GATTCACACG
CTTGAGGAAA TGCTAGGAGC GCGGCTACTT GTACGCACTA ACCGTCGGGT GGCCCTAACC
GATGCAGGAG AGGCTTTTCT GAAAGAGGCC CGCGCCATTC TTGTCCAAGT GGATCGTGCC
GTGGACTATG TGCGCAGTGT GGAACGCGGA GAGAAAGGTG AACTGCACAT CGGTATGACC
CGCTCAGCCA TGTTGGCAAA ACAGGTCCCC AGAGCCATAT TCCGGTTTCG AACAGAATTC
CCGTCCGTGC ATCTGGGTCT GGAAGAGTTG AATTCTCTCG AACAAATAGA CGCATTGATC
CACGAAAAAA TACAGGTGGG TATTATGCGG GTTCAGCATT TACCTGCAAT GCTTCAATCC
CATATGCTCT ACGCCGATCC TCTCGTAGCA GTTCTACCTG CCAAACACCC GTTCTGTCCG
ATTTCTCCAA CCCTGTCTGT ACCTCTTGAT CCGGCACAAC TGGTCCACGA GCAGTTCATT
ATTTTTGCGG ACTCGGCCGG TACCGGCATA CGAAATCAGT TTTATCAGAT TTGCCACGAT
GCCGGGTTTA ATCCCAGAAT TGTTCAGGAA GTGCAGGAAG CATCGACAAT GATAGGATTG
GTAGCGGCAG GTCTGGGGAT TACCATTCTT CCAGTTTCCT ATTCATATCT ACAGCAAGAT
AGCGTGTGTT ACATACCGCT GTCCTCCCCT AGCGCGCGTT CTGATATCCA TGTGGTTTAC
CGTTGTAGGG ACCATTCACC GCTTCTCCGA CAGTTATTGA CGATATTGAA GTCAGAGGCG
GCAGCGCACG CAGTTTCCAG GCGATGA
 
Protein sequence
MSLELRHLRY FIAVAEDLHF SRAAERLGIS QPPLSQQIHT LEEMLGARLL VRTNRRVALT 
DAGEAFLKEA RAILVQVDRA VDYVRSVERG EKGELHIGMT RSAMLAKQVP RAIFRFRTEF
PSVHLGLEEL NSLEQIDALI HEKIQVGIMR VQHLPAMLQS HMLYADPLVA VLPAKHPFCP
ISPTLSVPLD PAQLVHEQFI IFADSAGTGI RNQFYQICHD AGFNPRIVQE VQEASTMIGL
VAAGLGITIL PVSYSYLQQD SVCYIPLSSP SARSDIHVVY RCRDHSPLLR QLLTILKSEA
AAHAVSRR