Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1953 |
Symbol | |
ID | 6877938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1946501 |
End bp | 1947859 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642789820 |
Product | sugar transporter |
Protein accession | YP_002220378 |
Protein GI | 198284057 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.288052 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGAGA CAGAGACACG CCAACCCAGG AAGGACTGGC GATTTATTTT GATTGCAATT GTCGCTGGGC TCGGTGGATT GCTATTTGGC TACGACACAG GTGTCGTAGC TGGTGTTCTC TTGTTTTTAA ATCATGTTTT TCACTTTGAT GCAAGCATGA AGGGGCTATT TGTTGCAATC GCACTGGCCG CTGCCGCCGT GGGCGCAGCA TTTGCCGGAG CACTTGCAGA TGCTTTCGGA CGTCGCGCCG TACTGATCGT TGCCGCCGTT CTCTTCTCAG CAGGTGCGAT TTTGGCCTCA GTGGCTTGGA CCATACCCGT TCTCTTCCTG GGCCGGGTTA TGGTAGGAGC CGCCATTGGG GTGTCTTCCA TGATTACCCC TCTGTACCTA TCAGAAATCA CAGCGGCGCA TTGGCGCGGT GCCATTGTAA CCATCAATCA ATTTTATATT ACCGTGGGTA TTTTTCTATC CTATGTAGTT GATTATATGC TCTCTGGTGT CACCGATGGT TGGCGATGGA TGCTGGCAAT TGGTGCCATT CCCGGCTTCA TCTTGCTTGG GGGGATGATG ATCCTGCCGG AAAGTCCGCG ATGGTTGGCG GGGCGTGATC TTATAGAAAA GGCGACGGCA GGACTTCGTT TTTTGCGGGG ACGTCAGGAT GTTTCCGAAG AGCTTGGAGA TCTACGTCGC GATGTTGTTG AGGGCAGCCG TCGGGCAGCA CCCTGGTCGT TACTTCTGGA ACGTAAGGTT CGTAAGCCAC TGATTATTGG CATCGGTCTG GCAGTTTTTC AGCAAATAAC GGGCATCAAT GTGGTTATTT ATTTTGCACC GACCATTTTT CAGGATGCCG GTTTATCCTC GGCTTCGGTT TCCATTCTCG CCACCGTAGG TATTGGTGCC GTCAATGTGA TCATGACAAG CGTCGCAATG CGGTTACTGG ATACCGCCGG TCGCCGCAAA ATTCTGCTTT TTGGCCTCTG TGGTATGCTG GTCAGTCTTA TTGTTATTGG TATTGGATTC ATGATACAGC TTCACGGTGC ACTGGCTTAT ATCATCGTGG GCATGGTTGC TATCTTTGTC GCTTTTTTTG CTATTGGCCT TGGACCTATT TTCTGGCTGA TGATCTCTGA GATTTTTCCG CTCGCTATCC GAGGTAGGGC CATGAGTATT GCAACCGTTG CCAATTGGGT CTCAAACATG GTGATTTCCG GTATATTCCT AGACTTGTTA TTGATGATTG GACGCGGCCC TACTTTCATA TTTTATGCGT CAATGACTGT TTTGGCGATC CTGTTCACCC TATGGATTGT ACCAGAAACA AAGGGTAAGA CCCTGGAGCA GATCGAGGAT AGTCTATAA
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Protein sequence | MRETETRQPR KDWRFILIAI VAGLGGLLFG YDTGVVAGVL LFLNHVFHFD ASMKGLFVAI ALAAAAVGAA FAGALADAFG RRAVLIVAAV LFSAGAILAS VAWTIPVLFL GRVMVGAAIG VSSMITPLYL SEITAAHWRG AIVTINQFYI TVGIFLSYVV DYMLSGVTDG WRWMLAIGAI PGFILLGGMM ILPESPRWLA GRDLIEKATA GLRFLRGRQD VSEELGDLRR DVVEGSRRAA PWSLLLERKV RKPLIIGIGL AVFQQITGIN VVIYFAPTIF QDAGLSSASV SILATVGIGA VNVIMTSVAM RLLDTAGRRK ILLFGLCGML VSLIVIGIGF MIQLHGALAY IIVGMVAIFV AFFAIGLGPI FWLMISEIFP LAIRGRAMSI ATVANWVSNM VISGIFLDLL LMIGRGPTFI FYASMTVLAI LFTLWIVPET KGKTLEQIED SL
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