Gene Lferr_1944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1944 
Symbol 
ID6877929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1935807 
End bp1936535 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content65% 
IMG OID642789812 
ProductTonB family protein 
Protein accessionYP_002220370 
Protein GI198284049 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCACCG CCCTCGCATC CCCGTTGTTC CGCCCCCCGG AAGAAGGCCC CCTGCTGCGG 
CGGGCCTTGC TGGCCGCCGT GGCAGTGGAA CTGCTGGTAA TCGGCAACAT GGCGTTTTTC
TTCCGTCAGG AAAAGCCGCA ATCCCCGTCC ATTCCCCCCA TGCAACTGGC GCTGATCGCT
CCGGAGCCGG CCAAGGTCAT TCCACCGTCA CCAAGACCAG CAGCCCAACC CAAGGCGACA
CCCAAGCCCA TGCCAAAACC GGTAGCGAAG CCGCTTCCAC GGCCCGTCAC CCAGCCGGTG
GAGGCGCCGC GGCCGGCCAC CACGGCACCG AGCCCATTGC CTGCTGCACC GTCTCTTCCA
TCGCCTGTGA ACGCCCCGCC AGTCCAGAAC GCCAACCCGG TCAAAAGCGA CCCCGGGCCC
AGGGAGGACC GGGCCGGAGA AGGACAATAT GCCGGCAGGG TGGCGGGCGA GATCGAAAAA
CACAAGGTCT ATCCGGCTAG CGCCAAAGAA CTCGACATGA CCGGCGACGT CGTCCTTGCC
TACACCATCA GCCGGCAAGG CAGCGTAATG GAGGCGTCCG TCCTCAAGTC TTCCGGCTTC
AAGCTGCTCG ACGAAGCCGC CTTGAAGGCC CTGCGCGCCA GCCGCTTTGA CGCCATGACC
GCCGGCCTAT GGCCCGGAGC CCCCAGCAAG ACCTTCACCA CCACCGTGCA TTTCGCATTA
GACGACTGA
 
Protein sequence
MTTALASPLF RPPEEGPLLR RALLAAVAVE LLVIGNMAFF FRQEKPQSPS IPPMQLALIA 
PEPAKVIPPS PRPAAQPKAT PKPMPKPVAK PLPRPVTQPV EAPRPATTAP SPLPAAPSLP
SPVNAPPVQN ANPVKSDPGP REDRAGEGQY AGRVAGEIEK HKVYPASAKE LDMTGDVVLA
YTISRQGSVM EASVLKSSGF KLLDEAALKA LRASRFDAMT AGLWPGAPSK TFTTTVHFAL
DD