| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1921 |
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| Symbol | |
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| ID | 6877906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1910524 |
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| End bp | 1913412 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642789791 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002220349 |
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| Protein GI | 198284028 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATA TGATCGCGAA GGCGGTGATC TGCGTCATCC TTGCAGGACC GCTGTGTTAC
TTACCCTCTG CCTTGGCCAA CCCCCTGAAT CGGCATGTTT TGAGTTCGGT TCAACTTGAC
TCACAAAATA TAGCAAATTA CACCGCCACG TTGCCCACGG GCCGCATAGT GACGCCGGTC
GGCGCAATCA ACGGCACCCC GAATTTCCCC ACGATGGTAG CAGCAGATGG CAATCGTATT
GCCGTGCTGG CTAACGGTGC AACACCTTTT CAAACCATTA CGTTTTATGA CGGGAATAAT
CTTCGGCGGG TAGATCGCCT GGCAGCGTTT TCGAAAGTGG CACCCGTTCA ACCGATGGCT
TACGCAACAC CTGATGGTAG CGGTATCGCG ATCAATCCGC AACATGCGGG TGCGGCAGGC
GTGGTGTATA TTCCAAAAGA AGGCGTTGCA CTTAAAATTG CCCAGGCCAA AGCCACGCTT
GCCGCCGAGA GCGATTCCCA AGCCATTCCC AGTTCGGTCA TTTCGCACAG CGACTTTTTC
CAAGGGCTTA CTGCCGGTCC GGATGGAACC TTCTACGCTA CAGGAGGTGA TTCTGATCAG
GTGGTGGCTT TGCGCAGTGT GCAGGGCAAG GTTGAGGTGA TTCATCGGTA TCCTTTGCAG
TGGCAGGCTT TTCCGAAGGA TCAATATCCC TATCAGTATC AGGGGAACCA GCAGAAGAAA
TATCTCTTTT ACCCGGACTC GGTGGTCGTC GGTCCCCAGA ATAAGCATCT CTATGTGACG
GGGATGCTCG CCAACAGTCT GGCACGTATC AGTATCGCCA GTGGCAAGAC CGAATACGTC
AATGTCGGTG CCTATCCCTT TGCGGTGGCT CTGGCCGATA ACGGGCAGCG GTTGGTGGTC
AGCGACTGGG CAGGCAACGG CGTTGTGGTG CTGGACCGGC AACGCCTGAA GGTTCTGGGC
GAAATTCCCA CTGGGCCGGC GGTCGGCCCG TCAACAGTGG CGGCGGGTGT GCACCCTACG
GCGATGGTTG CGGTGCCCGA CAGTCCCGAC GTCTTTGTGG CCGACGCCAA TGTCGACAAG
GTGGTGGAAG TCGATACGCA AAACTTGCGC CCGCTGCAGG TGGTGGACGA CAGCCCCTAT
CCCGACGCCC CTCCCGGTAG CTATCCGGAT GGACTTGCGG TTGCCGATGG CAAGCTCTAT
ATCGCCAACG CCGGTAATAA TGATGTGGCG GTGTATGACA TCCGAACGGG AAAGCGTCTG
GGCCTGATTC CCACGGCCTG GTACCCGACC AGCCTGACGG TGGCGAATGG TGCCTTATAT
ATCAGCTGTG CCAAGGGTCT GGGTGCCGGG CCCAATCTAC AGTGGCAGTA TATCGGCAAT
ATGATGCACG GGGTGATCCA AAAGGTGGCT CTCCAGGAAA TCCCGGCCCA TCTGGCCGAT
TGGACCGAGA AGTCTTTGCA CAACGATGGT TTTACGTCGG CCCAGCGCAG CGCCCGTCAC
GAGGGAAATG TCAAAACCAC CACCTATCTG CGCAAGCATA TTCACTACGT TGTATTCATC
CTGCGTGAAA ATAAGACCTT TGATGAAGAT TTAGGGGATT ACACGGCGGC TGGCAAATGG
GCGGATCCAC ATTTTGATCT GTATAATCAG AAAGAATTGC CCAACTTGTA TAATCTGGCC
CATCATTATG CGCTGTTCGG GAATTTCATG GCCGACGGGG AAGTCACCGC ACAGGGTCAT
CAGTGGACCG ATGGCGCTTC GGATTCCGAT GTGGTGCAGC GCTTGTGGCC CGAATATTAT
TCTAACCGCG GTTTGCTCTG GAACGCCGGT CCCGGCGGTA GCTCTTCCCT CAAGCCCACC
GCACAGGGCG CACACAACCC CTATGATATC TATCAGCCGC TGGGAGATCA TACCAACCCC
TGGATCAGCT ATCCTGAAAA GCTCTATTTG TTCAATGATC TTTTGGAACA TCATATCCGT
TTCGAGGATT TTGGCGAGAA CGTGACGCGA CGCCGGGATG GTGTCATTCG TTCTGGCCTA
CTGCAGCATA TGGATGTCCG TTATCCCTAT TGGGATCGGA TGATTCTGGA TACGGCTCGT
GTGAGACTGG CCGAACACTG GCTGAAGGCC CATCCGGGCG TAAAATTTCC GCATTTCATT
TATATCTGGA TACCGGACGA CCACACTGCA GGCTTGTCTC CCTGCTATTA CGCGCCAGAT
TATTACGTAG CCAATAACGA TTACGCCACA GCCAAATTCA TCCATTACCT GTCCACGACG
CCGCAATGGA AGCATATGGC GATTTTCCTG ACCGAGGACG ATGCGCAGTC CGGTGCCGAT
CATATCAATG GTCATCGCAC TTTTGCGCTG GTCATCAGCC CCTGGGTCAA AAAAGGCGTG
CTGGAAACGC ATCTGAATTC CCAGGTGAAT ATCGTCAAAA CCATTGAAGC AACCTTGGGT
CTGCCGCCCA TGTCCCAGTG GGATGCCAAT GCCTCGGTCA TTGCGGGTAT CTGGACAGAT
CATCCGGATT TCGCGCCGAC GCCGGCGGTG CTTCCGATTC AGGTGCCGGT GTCTTTCAAT
CCGGGTAAAT GCAGCAATCG AACATTGCTC AGAAGAGAGG CTGGGGCCAC CGGTCATATG
CTGACTGCGG AATGGTTGAA GGCGCATACC GATCCCCACG GGCGGCGTCT GGCGCCGGTT
AGTGCGGCGA ACGCCTATAC CCCCACTTCG CTGCTCAAGG TCAGCGGTCC GGAGCAGTTG
AAGCAGGAAT GGATCGCCAG CAAGGGGGTC AAGAGCTATG ACCATTTTAT GGCCTACCTA
CATCACTATG CCCAAGTCCA TGGGGCGACC ATCGCCAGCT ATGAAGCCAA CGAAGGAAAA
CTCCATTGA
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| Protein sequence | MNNMIAKAVI CVILAGPLCY LPSALANPLN RHVLSSVQLD SQNIANYTAT LPTGRIVTPV
GAINGTPNFP TMVAADGNRI AVLANGATPF QTITFYDGNN LRRVDRLAAF SKVAPVQPMA
YATPDGSGIA INPQHAGAAG VVYIPKEGVA LKIAQAKATL AAESDSQAIP SSVISHSDFF
QGLTAGPDGT FYATGGDSDQ VVALRSVQGK VEVIHRYPLQ WQAFPKDQYP YQYQGNQQKK
YLFYPDSVVV GPQNKHLYVT GMLANSLARI SIASGKTEYV NVGAYPFAVA LADNGQRLVV
SDWAGNGVVV LDRQRLKVLG EIPTGPAVGP STVAAGVHPT AMVAVPDSPD VFVADANVDK
VVEVDTQNLR PLQVVDDSPY PDAPPGSYPD GLAVADGKLY IANAGNNDVA VYDIRTGKRL
GLIPTAWYPT SLTVANGALY ISCAKGLGAG PNLQWQYIGN MMHGVIQKVA LQEIPAHLAD
WTEKSLHNDG FTSAQRSARH EGNVKTTTYL RKHIHYVVFI LRENKTFDED LGDYTAAGKW
ADPHFDLYNQ KELPNLYNLA HHYALFGNFM ADGEVTAQGH QWTDGASDSD VVQRLWPEYY
SNRGLLWNAG PGGSSSLKPT AQGAHNPYDI YQPLGDHTNP WISYPEKLYL FNDLLEHHIR
FEDFGENVTR RRDGVIRSGL LQHMDVRYPY WDRMILDTAR VRLAEHWLKA HPGVKFPHFI
YIWIPDDHTA GLSPCYYAPD YYVANNDYAT AKFIHYLSTT PQWKHMAIFL TEDDAQSGAD
HINGHRTFAL VISPWVKKGV LETHLNSQVN IVKTIEATLG LPPMSQWDAN ASVIAGIWTD
HPDFAPTPAV LPIQVPVSFN PGKCSNRTLL RREAGATGHM LTAEWLKAHT DPHGRRLAPV
SAANAYTPTS LLKVSGPEQL KQEWIASKGV KSYDHFMAYL HHYAQVHGAT IASYEANEGK
LH
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