| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1874 |
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| Symbol | |
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| ID | 6877859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1853994 |
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| End bp | 1856342 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642789744 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_002220302 |
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| Protein GI | 198283981 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000717737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TGTTGATTAA TGCTACCCAC GCGGAGGAGT TGCGGGTGGC TTTGGTAGAT
GGTCAAAAAC TCCTCGATCT GGATATTGAA CGCGCGTACC GGGAACAGAA AAAAAGCAAT
ATTTACAAGG GCCGCATCAC CCGTGTGGAG CCGAGCCTCG AAGCCGCCTT CGTCGACTAC
GGTGCCGAAC GGCACGGTTT TCTGCCCCTC AAGGAGATCG CCCGGGAGTA CTTCCAGCAG
CAGGAGCAGG GCCGCAAGCG CATTCAGGAT CTGGTGCGGG AAGGTCAGGA AATCATCGTT
CAGGTAGACA AGGAAGAACG CTCCAGCAAA GGCGCGGCGC TCACCACCTT CGTCAGTCTG
GCCGGACGCT ATCTGGTGCT GATGCCGAAC AATCCGCGTG CCGGTGGCGT CTCCCGACGC
ATCGAAGGCG AGGACCGCAC CCAGATCCGC CAGCACCTCC AGCTCCTGGA CATCCCCGAA
AACATGGGCG TCATCGCCCG TACCGCGGGG ATCGGCCAGG AGCTGGAGGC CCTGCAGCGC
GACTTGGAAT ACCTCAAACA GATCTGGCAG GCCATCGTCG ATACGGCGGC GCCGCGCGCC
GCGCCTTTCC TGATTTATCA GGAGGGTAAT GTCGTGGTTC GCGCCCTGCG CGATCACTTT
TCCGAGGATA TCGGCGAGGT GCTGATCGAC GAGGAAGGCG CCTACAATGC CGCGGTGCAG
TTCATGGGCT CCATGATGCC GAAAATGGTG CATCGCCTGA AATACTACGA CAACGACGTA
CCTCTTTTCT CCCGCTACCA GATCGAGCAG CAGATCGAGT CCGCATTCAG CCGCGAAGTG
CGCCTGGAGT CGGGGGGAGC CATCGTCATC GACCACACCG AAGCGCTGGT GGCCGTCGAC
GTGAATTCGG GGCGCGCCAC CAAGGGACAG GATATTGCGG AGACCGCATT TCAGACCAAC
CTGGAAGCCG CTGAGGAGAT CGCCCGGCAG ATTCGCCTGC GTGATCTGGG CGGGCTTATC
GTGGTCGATT TCATCGATAT GGAATCTCCC AAACACCAGC GCGAAGTGGA GAACAAACTC
AAGGAGGCAC TCAAGCTGGA TCGGGCCCGG GTACAGTTGG GGCGCATCTC CCGCTTTGGC
CTCATGGAAA TGTCCCGGCA ACGTCTGGGT GCGAGCCTGG AGGAAGCCTC TTCCGAGCCC
TGCCCGCGCT GCAACGGTAC CGGTCAGATA CGGGGCTGCG AAGCCACCAG CATGCACGTC
CTGCGCCTGC TGTATGAGGA GTGCATGAAA ACCGGTGCCG CCGAGGTAGA GTGTCAGGTA
CCGGTGGATG TGGCCGTCTA TCTGCTCAAC GAAAAACGCC GCCAGATTCT GGAACTCGAG
GCCAAAACCG ACACCCGTAT TCTGGTCATT CCCACGCCAG AGATGGTTAC GCCCCATTAT
CAGATTCAGC GGACGCGCGT GGAGGGCGGC AGCGGCCGGA CGGCTCCGGC GCCTGGGGGT
GAAGGCAACG CCCTGCCCGC ACGCCCCAGC CGCCCGACGA ACGAATCCGC GGCCCTGAGT
CCGTTGACCG CACCGCCACC GCCCGAGGTG TTGCCACCAC TACGCACACC ACCGGCACCC
AGCAGCCCGA AGGCGAAAGT ACCTGCCAAG GTCGTTCCGC CGGAAGAAGG CATTCTGGCC
CGCCTGGTGC GGGCGCTGGT ATCCCGTTAT GTGCCCGTTG ATGCCGCGAC TTTCCTGGCG
GAAACCAGTG GTGCCGAGAT GTCGGCAAGC ACGGAGCAGG CCAGCGAGAT CAGCAGCGAT
GAGCAGGAAA ACAGCGGCGA GGGGCGCAGT GGCCGGCGCC GGCGCCGCGG TGGACGCCGG
GCGCGCGCCC GGCGTTCCAC CCAGGGTGGA GAGAATGGTG CCGAATCCTC TTCGGCAGAT
GAGGAAGCCC CTGAGGGCAG CTATACGACA GAGGAATTTC AGGATAACGA TCTGCTGGCG
GGCCCCGAGG ATGACAGCCA TGCCCTGGAG GAACTCGTCT ATCCCGGCTC GGTACCCGCC
GCTGCCGACT GGCACCAGAT GCTGGTCCCC GCCACGACGC GGACTCCGGC CGCCGATCCG
ACCTTTCAAA ATGATCCGGC ACGGGAGGTA GAAAGCCTGC CTGCAGAGGA GCCCGCGTCC
TTGACCGTTC AAGAACCGGT CAAAGACACC ACTCGGGAAT CCTTGCGGAT GGCAGTGCGG
CAGGAGCCCA CCCCGGAACC CGTGCAGGGT GACTTACTGG CCGTGGAGAC CATGGAACAT
GGCGGAGCAG TATCTGTTGC CGTCCCCGGT GAAGCCGAGC AGCAGTCTTT CCCGCTGGGC
GACGGTTGA
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| Protein sequence | MKRMLINATH AEELRVALVD GQKLLDLDIE RAYREQKKSN IYKGRITRVE PSLEAAFVDY
GAERHGFLPL KEIAREYFQQ QEQGRKRIQD LVREGQEIIV QVDKEERSSK GAALTTFVSL
AGRYLVLMPN NPRAGGVSRR IEGEDRTQIR QHLQLLDIPE NMGVIARTAG IGQELEALQR
DLEYLKQIWQ AIVDTAAPRA APFLIYQEGN VVVRALRDHF SEDIGEVLID EEGAYNAAVQ
FMGSMMPKMV HRLKYYDNDV PLFSRYQIEQ QIESAFSREV RLESGGAIVI DHTEALVAVD
VNSGRATKGQ DIAETAFQTN LEAAEEIARQ IRLRDLGGLI VVDFIDMESP KHQREVENKL
KEALKLDRAR VQLGRISRFG LMEMSRQRLG ASLEEASSEP CPRCNGTGQI RGCEATSMHV
LRLLYEECMK TGAAEVECQV PVDVAVYLLN EKRRQILELE AKTDTRILVI PTPEMVTPHY
QIQRTRVEGG SGRTAPAPGG EGNALPARPS RPTNESAALS PLTAPPPPEV LPPLRTPPAP
SSPKAKVPAK VVPPEEGILA RLVRALVSRY VPVDAATFLA ETSGAEMSAS TEQASEISSD
EQENSGEGRS GRRRRRGGRR ARARRSTQGG ENGAESSSAD EEAPEGSYTT EEFQDNDLLA
GPEDDSHALE ELVYPGSVPA AADWHQMLVP ATTRTPAADP TFQNDPAREV ESLPAEEPAS
LTVQEPVKDT TRESLRMAVR QEPTPEPVQG DLLAVETMEH GGAVSVAVPG EAEQQSFPLG
DG
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