Gene Lferr_1845 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1845 
Symbol 
ID6877829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1825372 
End bp1827360 
Gene Length1989 bp 
Protein Length662 aa 
Translation table11 
GC content61% 
IMG OID642789714 
ProductUvrD/REP helicase 
Protein accessionYP_002220273 
Protein GI198283952 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01074] ATP-dependent DNA helicase Rep 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCCA TGGCTGAGCT CAATCCGCCA CAGCAGGAAG CCGTAACACA CATCCACGGT 
CCCCTGCTGG TGCTGGCCGG GGCCGGGTCG GGCAAGACCC GGGTCATCAC CCGGAAAATC
GTCCATCTCA TCCGGGAGCA ACAGGTCGCA CCCAGGCATA TCTGCGCGGT GACCTTCACC
AACAAGGCCG CCCGTGAAAT GAAGAGCCGC GTCGGGGAGG CCTTGCAGGG CCATAGCAGC
CGCGGCCTGA TGGTCTCCAC CTTTCATCAT CTGGGCCTGC AGATCCTGCG TAAAGACATC
GAGCGCCTGG GTTATCGCGG CAACTTCAGC GTCATTGACC CCGGCGATAG CCTGGGGATG
GTGCGTAATC TGCTCCGCGA GGCCAATGGC CCCAGCGATC TCGCCGAAGC CATCCAGTCC
CGCATCTCCC GCTTCAAGAA TGACGGCATC TTTCCCGAGG AGGCACGTGC CGACGACCGT
CTCGGCCAGG AGGCTGCCCA TATCTATACG ACCTATCAGC GTTCCCTCAG CGCCTGCAAC
GCCGTGGATC TGGATGACCT CATCCTCTTG CCCATCCGTC TGCTACAGGA CGATGCGGAG
GCCCGTTATG CCTGGCAGGA CCGTATCCGC TACCTGCTGG TGGATGAATA TCAGGACAGC
AACGGCGCAC AGTACCGGCT GATAAAAAGC CTGCTGGGCA CCCGCCACAA CCTGACCGCA
GTGGGAGACG ACGACCAGAG CATCTACTCC TGGCGGGGTG CGGCTGCCGA CAACCTGGAT
CGGCTGGCGC AAGATTTCCC CAACCTCAAG GTGGTCAAAC TGGAGCAGAA CTATCGTTCC
ACCGGCCGCA TTCTCCAGGC CGCCAATACG GTCATCGCGC AAAATCCCCA CTTCTTCGAA
AAACGCCTGT GGAGCACCCT GGGCGATGGC CACAGCATCC GCGCCCTGCG CTGCGCCAAC
GAGACGGACG AGGCGGAGCA AGTGGTCAAT GCCATTCTCC GCGACCGCTT TCAGCGGCAG
GGTGAATACC GCGATTACGC CATACTGTAC CGCAGCAACC ATCAGGCCCG TCCCTTTGAA
ACGGCCCTGC GCAATGCCCG GATTCCATAC CAGATATCCG GCGGGATCTC GTTCTTTGAA
CGCAGTGAAA TCAAGGATTT TCTGTCCTAT CTGCGGCTAC TGGTCAATCC CGATGATGAT
CCCGCCTTTT TGCGGGCGGT CAACACGCCA CGCCGGAGCA TCGGCAGCAG CACCCTGGAA
CGCCTGGGTG CCTTCGCCAA GGAGCGTAAT CTCTCGCTCT TCGCCGCACT TTGGGACGAT
GCGCTGGATG TTCCCGACAA GGCGCGCATC GCCCTGCACG GCTTCGCCGG CTGGGTGAAT
CTCAAAACGG ACGAAATCGG CAAGACCGAG CTCATCCCCG CCCTACAGAG TCTGCCGGAA
GAAATCGGCT ACCTGCAATA TCTGCAGAAT GAAGGAGATG AAAAAGACGC CGCGCGCCGC
TGGGAGAATA TTCAGGAGCT TTTGAACTGG ATGCAACGCC TGCAGGAACA GGATGAAGGC
CCGCAAACCC TTGCGGAGAT CCTCAACCGC CTGATGCTCT TCCATGTGCT GGAGCGTGAG
GAGGATGACG ATCGCGATGT GTTGCGCCTG TCCACCCTGC ACGCGGCCAA GGGTCTGGAG
TTCCCCCAGG TGTTTCTGGT TGGCGCGGAG GAGGAACTGC TGCCCCACCG CAACAGCGAA
ACCCTGGAGC AGATTCAGGA AGAACGCCGC CTCTTTTACG TGGGCATGAC CCGCGCCCGC
TTCCGCCTGA CCCTCAGCCT TTGCCGTAAA CGTCGCCGCT ACGGCCAGGA TGTCCATCCG
GAACCCTCCC GCTTCCTCCA GGAAATCCCC AAAGAACATC TGGACTGGCA GGGCGACCAG
AACCCAGAAG AAGAAATGGA CCCCACCGCC GCTTTCGCCC ATCTGCGGGC GATGCTCGGC
AAGACCTGA
 
Protein sequence
MTPMAELNPP QQEAVTHIHG PLLVLAGAGS GKTRVITRKI VHLIREQQVA PRHICAVTFT 
NKAAREMKSR VGEALQGHSS RGLMVSTFHH LGLQILRKDI ERLGYRGNFS VIDPGDSLGM
VRNLLREANG PSDLAEAIQS RISRFKNDGI FPEEARADDR LGQEAAHIYT TYQRSLSACN
AVDLDDLILL PIRLLQDDAE ARYAWQDRIR YLLVDEYQDS NGAQYRLIKS LLGTRHNLTA
VGDDDQSIYS WRGAAADNLD RLAQDFPNLK VVKLEQNYRS TGRILQAANT VIAQNPHFFE
KRLWSTLGDG HSIRALRCAN ETDEAEQVVN AILRDRFQRQ GEYRDYAILY RSNHQARPFE
TALRNARIPY QISGGISFFE RSEIKDFLSY LRLLVNPDDD PAFLRAVNTP RRSIGSSTLE
RLGAFAKERN LSLFAALWDD ALDVPDKARI ALHGFAGWVN LKTDEIGKTE LIPALQSLPE
EIGYLQYLQN EGDEKDAARR WENIQELLNW MQRLQEQDEG PQTLAEILNR LMLFHVLERE
EDDDRDVLRL STLHAAKGLE FPQVFLVGAE EELLPHRNSE TLEQIQEERR LFYVGMTRAR
FRLTLSLCRK RRRYGQDVHP EPSRFLQEIP KEHLDWQGDQ NPEEEMDPTA AFAHLRAMLG
KT