Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1828 |
Symbol | |
ID | 6877812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 1809212 |
End bp | 1810048 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642789697 |
Product | polysaccharide deacetylase |
Protein accession | YP_002220256 |
Protein GI | 198283935 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACTTG GGAAGTCGGG GTTGTTTCTC CAGGCCGGTA GGGCGCAGCG GACAGAAAAG CCGGACATGC GCGTTGTTTG GCAAACGGTG TCTTTACTCG TCCTATTTTT CGCCATACCG GCTTGGGGAT CAGGGACAGG GCGCGTCGTG CCCATCCTGC TCTATCATCG TTTTGGTCCC GTGCTGCGAG ATGCCATGAC CGTTCGCACG ATGGTCTTCG CGGCACAGAT GGAATACCTG AGGAGCCATG GCTACCGGAT TGTCCCGCTC AAGGAAGTCG TGGCATATAT TCGTGGCGTT GGACCCCCTC CCCCTCCCCA TTCCGTGGTG ATCACCGCGG ATGACGGGCA CCAGTCGGTG TACACGGACA TGTTTCCCCT GGTGCAGCGT TACCATATTC CGGTGACGCT CTTCATCTAT CCCTCCGCCA TATCCCGGGC GTCTTACGCC CTGACCTGGG ATGAGTTGCG GATCATGCAT GACTCCGGGC TCGTGAATAT CCAGTCCCAC ACCTATTGGC ATCCGAACTT CAAGATAGAA AAGAAACGTC TTTCCCCCCA GGCATACGAG AAGTTCGTGG CCATGCAGTT GGAAAAGTCC AGGGCGAAGC TCGATCAGGA ACTGGGGATC AAGGTGGACA TGCTCGCCTG GCCCTACGGG ATCTACAACG AGGAGCTCAT CAAGAGCGCT GCTACGGCGG GATATATCGC CGCCTTCACC ATGGTAAGGG CGCCTGCCGG GCCATCGGAT AACGTGATGG CCCTCCCGCG CTATCTGGTC ACGGACCAGG ATACGGGCAA GACATTGGGA AGACTGTTGA CCACGGACTC CGGATAA
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Protein sequence | MELGKSGLFL QAGRAQRTEK PDMRVVWQTV SLLVLFFAIP AWGSGTGRVV PILLYHRFGP VLRDAMTVRT MVFAAQMEYL RSHGYRIVPL KEVVAYIRGV GPPPPPHSVV ITADDGHQSV YTDMFPLVQR YHIPVTLFIY PSAISRASYA LTWDELRIMH DSGLVNIQSH TYWHPNFKIE KKRLSPQAYE KFVAMQLEKS RAKLDQELGI KVDMLAWPYG IYNEELIKSA ATAGYIAAFT MVRAPAGPSD NVMALPRYLV TDQDTGKTLG RLLTTDSG
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