| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1797 |
|---|
| Symbol | |
|---|
| ID | 6877780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 1776313 |
|---|
| End bp | 1778136 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642789666 |
|---|
| Product | peptidase M61 domain protein |
|---|
| Protein accession | YP_002220225 |
|---|
| Protein GI | 198283904 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCATTC CCCCACTGAG TTACCGGATC AGCGCCGAGC CGCGGGCCCA TCTTTTTCGG
GTAACCCTCA GTATTTCCGA GGCGGACCCG GAAGGACAGA TCCTTGCCCT GCCCGCCTGG
GTGCCCGGCA GCTACACCAT CCGCGATCTT GCCCGCCATG TGACCCAAAT CCGCGCAGAA
CGCAACGGAC AGGATATCGC CCTGCACAAA ATCGCCAAAG ACCGCTGGCG GCTTGCGCCA
GGGCATGGCC CGGTGGTCGT CCATTACGCC GTCTACGCCT TCGACCGCTC GGTACGGACC
ACATATCTGG ATGATCAGGG AGGCTTTTTC AACGGCCCGG CCATCTACCT GCGGGTGTCC
GGACAGGAGG CACAAACGCA CGCGGTCCTC CTCGAAGGCC CCGAAGACTG GCAGGTAGGC
ACCGCCCTCC CCCGCCAGAG CGGTGCGGTA TGGAGCTGGG GCGGTTTTGA AGCCTCCGGC
TTTGATGCCC TCATCGATCA TCCAGTGCTC ATGGGGCCCC TTACCCTGCT GGATTTCGAG
GTGGGAGAAC GACCTCATCA CCTGCTTATC CAGGGCACTC ACCAGGCGGA TCTGCAACGT
CTCGGTGCCG ACCTGACCCG CATCTGCGAC TGGCAGCAGC GCTTCTGGGG GGATGCCGCC
TTCACAGGGT ATCACTTTCT GTGCATGACC AGCACCGACG GCTACGGCGG GCTGGAGCAC
CGTGCGTCCA GTGCCCTCCT CTGCGCCCGG GATGACCTGA GCGGTCGCAA CGAGGACCAT
TACCGGCGTT TTCTGGGGCT GGCCAGCCAC GAGTATTTTC ATGGCTGGCT GGTGCAGGCC
ATCCGTCCCG CCGTGCTCGG CGCCAGCGCA CTGGACCGGG AGGTACTCAC CCGCGATCTC
TGGGTCTTCG AGGGTATCAC CTCCTATTAT GACGATCTCT GCCTGCGCCG CGCCGGTCTG
ACGACCCCCG CGCAATATCT GTGCGGCGTC GGGAAGGAGC TTACCCGCCT GCTGCGCCGC
CCGGGACGTT TCCTGCAAAG CGTGGCGGAA TCCAGTGAAG ATGCCTGGAT CAGGCTCTAT
CATCCCCATG TCAACAGCGC CAACTTTGAG ATCAGCTATT ACAACAAGGG CGCCCTGCTC
GCCCTCTGCC TGGACCTCAG TCTGCGCCTA GAGAGTGCCG GGGCCCTGAG TCTGGACACG
GTACTTGGGC GCCTGTGGCA GGATTACGGA CGCACCGGCA TCCCCCTGCC CGAAGGCCAG
TGTGTCGGGA TCGTCGAAGA CCTTGCCGGG CCCGCGCTCG CCGGGCGTCT ACAGGACTGG
ATCACCGCGA GGACCGACTT ACCGTTGCCG GCGCTGCTCG CGGAAATGGG CATTGCGCTG
CGCCTGCGCG CGGCCAGCGG CCCGCAGGAT GAGGGTGGAG AGCCCGCAGA GAAAACCCTG
CGTGCATGGC TTGGCGCGCA GTGGTTACCC CATGCGCTGG GTGTCCAGTT GCGCCATGTG
CAGACGGACA GCCCTGCGGA GCAGGCGGGT CTGTCCCCGG ACGACATTCT CGTCGCCCTG
GATGGCGTCC GGACTACGGC GGAACAATTG CCGGAGCAAC TGGATGCGGT TCCGGAGGGC
GCGGCGCTGC GCATTCAGTT CTTCCGTGAC AACATCCTCC GGGAAACCCG CGTGACCCCT
ACCGCACCGC CACGGGATAC GGCCTGGCTG GAATTGCTGG AGGACGTCGA TGATGTGGTC
CTCGCGCGTC GCCGCGCCTG GCTGGAGGGA ACGGGCGCGG TCAGTGAAAC GTCCCGGTGC
GCGTCCCTGC CGGACGGGGG ATAG
|
|---|
| Protein sequence | MIIPPLSYRI SAEPRAHLFR VTLSISEADP EGQILALPAW VPGSYTIRDL ARHVTQIRAE
RNGQDIALHK IAKDRWRLAP GHGPVVVHYA VYAFDRSVRT TYLDDQGGFF NGPAIYLRVS
GQEAQTHAVL LEGPEDWQVG TALPRQSGAV WSWGGFEASG FDALIDHPVL MGPLTLLDFE
VGERPHHLLI QGTHQADLQR LGADLTRICD WQQRFWGDAA FTGYHFLCMT STDGYGGLEH
RASSALLCAR DDLSGRNEDH YRRFLGLASH EYFHGWLVQA IRPAVLGASA LDREVLTRDL
WVFEGITSYY DDLCLRRAGL TTPAQYLCGV GKELTRLLRR PGRFLQSVAE SSEDAWIRLY
HPHVNSANFE ISYYNKGALL ALCLDLSLRL ESAGALSLDT VLGRLWQDYG RTGIPLPEGQ
CVGIVEDLAG PALAGRLQDW ITARTDLPLP ALLAEMGIAL RLRAASGPQD EGGEPAEKTL
RAWLGAQWLP HALGVQLRHV QTDSPAEQAG LSPDDILVAL DGVRTTAEQL PEQLDAVPEG
AALRIQFFRD NILRETRVTP TAPPRDTAWL ELLEDVDDVV LARRRAWLEG TGAVSETSRC
ASLPDGG
|
|---|
| |