| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1788 |
|---|
| Symbol | |
|---|
| ID | 6877771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1768380 |
|---|
| End bp | 1768790 |
|---|
| Gene Length | 411 bp |
|---|
| Protein Length | 136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642789657 |
|---|
| Product | PilT protein domain protein |
|---|
| Protein accession | YP_002220216 |
|---|
| Protein GI | 198283895 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.813085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCAAAT ACCTGCTGGA TACCAATATC TGCATCTTTA CTATCAAGAA CAAGCCACCG
GAGATCCGCG AACAGTTCCG TCAGCACCAT GGGCAAATGG CTATCAGCAC CGTCACCTTG
ATGGAGTTGA TCTATGGCGC GGAGAAATCA CAGGTACCGG AACGCAACCT GGCCGAAGTT
GAAGGGTTCG CCGCCAGGCT GGAAGTGCTC GAATTCGGGA GCGAAGCCGC CAAGCATACT
GGGCAGCTCC GCGCAGAACT GGCCAAGATC GGCAAACCCA TCGGGCCTTA TGACCAGATG
ATCGCAGGCC ACGCCAGAAG CCTGGGATTG TTTGTCGTGA CCAACAACTT GCGGGAATTC
GAGCGCGTTC CGGGATTGCG GGTCATGGAT TGGCAGAGCT CACGCCTGTG A
|
|---|
| Protein sequence | MIKYLLDTNI CIFTIKNKPP EIREQFRQHH GQMAISTVTL MELIYGAEKS QVPERNLAEV
EGFAARLEVL EFGSEAAKHT GQLRAELAKI GKPIGPYDQM IAGHARSLGL FVVTNNLREF
ERVPGLRVMD WQSSRL
|
|---|
| |