Gene Lferr_1747 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1747 
Symbol 
ID6877729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1723938 
End bp1725467 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content57% 
IMG OID642789616 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002220176 
Protein GI198283855 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.128631 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCGGCAA GCGCAATTCA TGCGACTACC CCTCCTGAAT CATCCCAAGA GCATCGTTGG 
CTGATCACCA TCGCCTTCAT GCTGGCGATG GTGATGGTCT TGTTGGACAT GACCGTAGTG
AGCGTGGCGC TGCCCTATAT GATGGGAACC TTGGCTGCTA CGCCGAACCG GATCACTTGG
GTGCTCACCG CCTATCTGGC CGCCAACGCA GTCACTATAC CATTGACCAG CCATCTTGCC
GCCCTCTTTG GGCGGCGGCG TCTTTTCCTC ATCAGTGTTT CCGGTTTTGT CGTTGCCTCG
GGGCTGTGCG GGGCGAGCCA GACTTTGGCG GAAATCGTCT TTTTACGCAC CCTGCAAGGG
GGATTCGGCG CGCTCATGGT GGTCTTGGCC CAATCCACCA TGGTCAACCT CTTTCCGGGC
AAGGAACGGG GGCGAGCCAT GGCCATTTGG GGCATGGTGC TGATGGTGGC GCCGGCCATG
GGTCCGGTCT TTGGCGGCTA TATCACGCAG CACATGGGCT GGCGTTGGCT GTTCTACATC
AACCTTCCCG TCGGGATTTT TTCGCTCTTG CTGGGTGCCG CCACCATGCG GAAGAGCGAA
AGAAAAAATC TGGCCACCGA CTGGCCGGGT CTGTTGCTCA TGGCGATTGG AATCGGCAGC
CTGCAAATCG TGCTGTCACG GGGTAATGAG GATTATTGGT TTGACTCCAG ACTCATCGTG
GCCCTGTCGA TCCTCGCGGT TTTTGGTATC CTCACCTTTT TGCTGCGGGG ATGGATGATC
GCCGACAACA TCATCGATCT CCATCTCTTT CGCGACCGCA GTTTCGCTAC CGCCACGCTG
ATCACCGGCG TATTCGGCCT TGGCCTCTTC GGCACCACCG CCATGCAGCC GCTCATGCTG
GAGGGGCTGC TGAATTACAT GCCGGAAACC ATCGGCTGGG TCATGTTTCC GCGCGGCGTT
GCCAGCGCCG TTACCATGAT GATCGTTGGG CGCTTCATCA ATCGTTACCA GCCGCGACTT
TTTATCGTAG CCGGGGTTTT GCTGACCGGG ATCAGTACCT GGATCATGAC CAGTTACAGT
CTGTATATCA GTCCTGTTTG GGTCATTTAT CCCGGTATTA TCCGGGGGAT CGGCATGGGG
ATGATCTTCG TGCCCCTTAC CGTCATCGCC TTCGATACCC TGCCGCTTGC GGTATCGGCG
GAAGCCAGCG GCATTTTCAA CCTCGCCCGC ACCCTCGGGA ATTCCATCGG CATCGCCATC
GACGGTACCG TGCTCACGAA TGAGACCCAG ATCAACTGGA ACCAGTTGGG CGGACACATC
AATACCTTCA GTGCGACGCT GCCGAATTGG CTGCAAGCCA GCGGATTGGC ACCACAGGAT
CCTCGCGTCT GGGCATTGCT CGGTCAGACC TTATTCAGCC AGGCCGAAAT GATCGGCTTC
CTGGACGTGT TTCAGTGGAT CACCATCATC TTCTTTTGCT TGTTACCCCT GATATTGCTC
ATCCCCAAGC GTATTCTTCC AACAGGTTAA
 
Protein sequence
MAASAIHATT PPESSQEHRW LITIAFMLAM VMVLLDMTVV SVALPYMMGT LAATPNRITW 
VLTAYLAANA VTIPLTSHLA ALFGRRRLFL ISVSGFVVAS GLCGASQTLA EIVFLRTLQG
GFGALMVVLA QSTMVNLFPG KERGRAMAIW GMVLMVAPAM GPVFGGYITQ HMGWRWLFYI
NLPVGIFSLL LGAATMRKSE RKNLATDWPG LLLMAIGIGS LQIVLSRGNE DYWFDSRLIV
ALSILAVFGI LTFLLRGWMI ADNIIDLHLF RDRSFATATL ITGVFGLGLF GTTAMQPLML
EGLLNYMPET IGWVMFPRGV ASAVTMMIVG RFINRYQPRL FIVAGVLLTG ISTWIMTSYS
LYISPVWVIY PGIIRGIGMG MIFVPLTVIA FDTLPLAVSA EASGIFNLAR TLGNSIGIAI
DGTVLTNETQ INWNQLGGHI NTFSATLPNW LQASGLAPQD PRVWALLGQT LFSQAEMIGF
LDVFQWITII FFCLLPLILL IPKRILPTG