Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1739 |
Symbol | |
ID | 6877721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1715091 |
End bp | 1716947 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642789608 |
Product | malto-oligosyltrehalose trehalohydrolase |
Protein accession | YP_002220168 |
Protein GI | 198283847 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.158802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000847686 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTGCCGCC ACGACATGCC TTTCGGCGCC CAGCGCCTCG AAGACGGGCG CTGGCGGTTC CGGCTCTGGG CACCTGCGGC GGGAACGGTG GAACTCCAGC TCCCGCACGG CACAGGGGTA CGGTACACGC CTATGCGGCC GGAGACCGAG GGTTGGTTCG CGCTGGAAAC GGGGGCGGCT CCGGGGACCG CTTATGCCTA TCGCATCAAT AGGGACCTCG TCGTCCCGGA CCCCGCATCC CGCGCCCAGC TCGACGATGT TCACGGCCCG AGCCTGCTGG TGGACCCCGC TGCCTTTGCC TGGGAAGACG GCCATTGGCG GGGGCGGCCC TGGGAAGAGG CCGTGATCTA CGAGCTGCAT ACCGGCACCT TCTCGTCCGA GGGCACTTTC GGCGGGATCA CCGCGCGCCT GGACCAGCTG GCCGGGCTGG GCGTCACGGC CCTGGAGCTC ATGCCCGTGG CGGACTTTCC CGGCGAGCGG GACTGGGGCT ACAACGGGGC GCTGCCCTTC GCGCCGGATC GGCGCTACGG CACGCCCGAC GACCTGAAAC GCCTGGTGCA GGGAGCTCAC CGGCGTGGCC TCATGGTATT CCTCGACGTC GTGTACAACC ATTTCGGACC CGTGGGAAAT TATCTGTCCC ATTACGCCCC CGCCTTCTTC ACCGACCGCC ACCACACCCC CTGGGGGGCG GCCATCAATT TCGATGGCCC CGGAAGCCGC ACGGTGCGCG CGTTTTTCAT CCACAACGCC CTGTACTGGC TGGAAGAGTT TCACATGGAC GGCCTGCGCC TCGACGCCGT GCATGCCATC TGCGACGACT CGGACCCGGA CATCATCGAG GAGCTGGGCG CGGCGGTCGC CCGGCGCTTT CCGCACCGCC CCATACACCT GATGCTGGAG GATGACCGCA ACAGCGCCCA CTACCTGGTC CCGGAGGGTT CACGGCGCAT ATATGCCGCC CAATGGAACG ATGATTTCCA CCACGCCCTC CACGTCATCC TGACCGGTGA GGCGGAGGGC TACTACGGGG ACTTCGCCGA CGATCCCCAT GGGCTCCTCG CCCGCTGCCT GGCCGAAGGC TTCGCCTTCC AGGGTGCCTG GTCCGTCTAC CACGGGCGGC GCCGCGGCGA GCCGAGTGCC GGTCTCCCGG TCACCGCCTT CATCGGCTTT CTCCAGAACC ACGACCAGGT GGGCAACCGG GCCTTCGGCG ATCGTCTGGC GACCCTCGCA ACGCCGGAGG CCGTGCGGGC GGCGACGGTG CTGCTGTTGC TGGCGCCGGC CCCGCCATTG CTCTTCATGG GCCAGGAGTG GGGCAGCCGG CGCCCATTCC CGTTCTTCTG CGACCTGGGA CCCGACCTCG CGCCGCAGGT GCGGGAAGGC CGGCTGCGCG AGTTCGCACG CTTCCCGGAC TTCGCCGACG CCGCTGGCCG CGCCCGCATC CCCGATCCCA GCGACCCGGC GACCTTCCGG TCCGCCCGGC TCGACTGGCG CGAAAGGGAG CAGGAAACGC ACCGAGCCTG GCTGGCCCTG CATCGCGAGC TGCTCGCCCT TCGCCAGCGC GAGCTGGTGC CGCGTCTGGC CGGCGTCACC GTGGAGGGGG CGGTGGCGGC CCATTTCGGC AAAGGCGGCG TGACGGCACG CTGGCGCCTC GCCGATAGGA TCGTCCTGGT GGTCGTCGCC AACCTGGACG CGGAGCCGGC CGCCCACCTT CGCCTTCCCA CCGGCAAGCA GCTTTACGCC ACACCAGCGG CATCCGGACC CGACGGCTCC TTCGCACCCT GGGCGGTGGC TTTCTTCCTG TGTGCCCCCC ATGACGCCGA GGTCGCCGTG GACGGAACAT CGCCGTTCGG CCACTGA
|
Protein sequence | MCRHDMPFGA QRLEDGRWRF RLWAPAAGTV ELQLPHGTGV RYTPMRPETE GWFALETGAA PGTAYAYRIN RDLVVPDPAS RAQLDDVHGP SLLVDPAAFA WEDGHWRGRP WEEAVIYELH TGTFSSEGTF GGITARLDQL AGLGVTALEL MPVADFPGER DWGYNGALPF APDRRYGTPD DLKRLVQGAH RRGLMVFLDV VYNHFGPVGN YLSHYAPAFF TDRHHTPWGA AINFDGPGSR TVRAFFIHNA LYWLEEFHMD GLRLDAVHAI CDDSDPDIIE ELGAAVARRF PHRPIHLMLE DDRNSAHYLV PEGSRRIYAA QWNDDFHHAL HVILTGEAEG YYGDFADDPH GLLARCLAEG FAFQGAWSVY HGRRRGEPSA GLPVTAFIGF LQNHDQVGNR AFGDRLATLA TPEAVRAATV LLLLAPAPPL LFMGQEWGSR RPFPFFCDLG PDLAPQVREG RLREFARFPD FADAAGRARI PDPSDPATFR SARLDWRERE QETHRAWLAL HRELLALRQR ELVPRLAGVT VEGAVAAHFG KGGVTARWRL ADRIVLVVVA NLDAEPAAHL RLPTGKQLYA TPAASGPDGS FAPWAVAFFL CAPHDAEVAV DGTSPFGH
|
| |