Gene Lferr_1680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1680 
Symbol 
ID6877660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1642827 
End bp1643306 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content60% 
IMG OID642789547 
Productalkylhydroperoxidase like protein, AhpD family 
Protein accessionYP_002220109 
Protein GI198283788 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00778] alkylhydroperoxidase AhpD family core domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.581321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCG AGCATGCCCG TATTGCCTAC CTCTCCTTCA CCAAGACCGC GCCCGAAGTG 
TACGCCGCAC TCCTGGCGAT GGGGAAAGCG GTCGATGATT CCGGCCTCGA AAAACCCCTG
ACGGAACTGA TCAAGGTGCG GGTATCGCAA ATCAACGGCT GTGCGTTCTG CATTCAGTAT
CATCTGAATG TCGCCCGTCA AATCGGTATG GAACCGGTCA AGCTGGATCT GGTCGCGGGC
TGGAGGGATG CCGGTGTTTT TTCTGCACGG GAGCAGGCCG CTTTGGCGTG GGCGGAATGC
CTGACGGCGC TCGCGACCCA GGGGGCGCCC GACGCCGTCT ATGAGACACT GCAGTCTCAG
TTCACGGAAA CAGAAGTGAC GTTCCTGACG GTGGCCATCG GCGCCATCAA TCACTGGAAT
CGACTGGGTG TTGGTCTGCG ATTTTCGCCG CCGCCCCCTC GCACGGGGAG TCACGTATGA
 
Protein sequence
MSTEHARIAY LSFTKTAPEV YAALLAMGKA VDDSGLEKPL TELIKVRVSQ INGCAFCIQY 
HLNVARQIGM EPVKLDLVAG WRDAGVFSAR EQAALAWAEC LTALATQGAP DAVYETLQSQ
FTETEVTFLT VAIGAINHWN RLGVGLRFSP PPPRTGSHV