Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1658 |
Symbol | |
ID | 6877638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1626240 |
End bp | 1627943 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642789525 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_002220087 |
Protein GI | 198283766 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.332271 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGACCT TCAACCACCG CCGTTACCGC GCCTTCGCGC CCGTTCACAA ACCGAACCGG CGCTGGCCTA ACCGCCGTAT GCACCACGCG CCCGTTTGGA GCAGCGTCGA TCTGCGCGAT GGCAATCAGG CGCTGCTCTC CCCCATGAGC GTCGAGCAAA AGCTCCGGAT GTTCGACTTG CTCGTACGTA TGGGCTTTCG GGAGATCGAG GTCGGTTTTC CCGCCGCCTC CCAACCAGAT TTTGACTTTG TGCGGCGCAT CATTGAAGAA GATCGTATCC CCGAGCAGGT GACCATCCAG GTGCTCACCC AGGCGCGGGA AGCCCTGATT GACCGCACAT ACGAGGCCTT GAAAGGGGTA CGGCGGGCGA TTGTCCATGT CTACAACTCC ACCAACCCGG CTCAGCGCGA ACAGGTGTTT GGCCTGGATC GGGAGGGCAT CCAGGACATT GCCGTGCGAG GCGCGGAGTG GGTGAAGGAC GGGGCCGCAC GCTGTCCAGA GACGGAATGG GTCTTTCAGT ATTCGCCGGA GAGCTTCAGC GCCACCGAGC CGGACTACGC AGTGGAGATC TGCGAGGCAG TCAACGCGGT CTGGCGGCCC GACCAGGGGC AGGCGGTGAT CCTCAACCTG CCTGCCACCG TCGAATCGTC CATGCCCAAT GTCTTCGCGG ACCAGATTGA ATGGTTCTGC GACCACTTGC GCGGACGGGA GCACGTGAAA ATCAGTGTGC ACAACCACAA TGACCGCGGT TGCGCGGTGG CGGCGGCGGA ACTGGCGGTG TTGGCCGGCG CCGACCGGGT AGAGGGCACC CTCTTCGGCA ACGGCGAGCG GACCGGCAAC ATGGATATCC TCACCATGGC CATGAATCTT TACTCTCAGG GCATTGATCC GCAACTGGAT ATGTCCATGG GCACGGAAAT CGCGGAGATC TATACCACGT GTACGGGTAT GGTCGTGCCG CCGCGTCATC CCTGGTTTGG CGAACTGGTC TACACGGCGT TTTCCGGCAG TCATCAGGAC GCCATTCGCA AGGGCATGCA CCATCGGCGG GGACGGGAAG ATGCTGTCTG GGAGGTGCCC TATCTGCCCA TCGATCCCGC CGATCTGGGG CGCAGGTACG AGGAGGTGGT GCGCATCAAC AGCCAGTCCG GGAAGGGCGG TGTCGCCCAT GTGCTGGAGC GCGACCACGG TATTTCCTTG CCGCGCTGGT TGGCGCAGGA CTTCAGCGCC GTAGTGCAGG CGACTTCCGA GCAGGAGACG GGTGAAGTCA GCTCAGCGCA GATTTTCGCC CTGTTCGAGA GCCATTACTG CCATACCACG GAGGATTGGC ACCTGCGACG CTACCGTCTC AGCCGGGAAG GGGAGCAGGT CGCAGGGACC GTGGTGGTTG GCCCGGAGGC ACAGCCGCAC ATTTTACAGG GCAAGGGGAG TGGCGCCGTA GGCGCCTTGG TCGATGCGCT GATCCAGAGT CGGGGCGTTC GTGCCGAGGT GGAACAGTTC GACCAGCATG CCCTCGGTAG CGGCACCGGC GCCCGCGCCA TGGCCTGCGT CCGGGTCAGG GTGGATCATG GTCAGGCGAG GTCTGCGGTG GCTTTTGGCG AGGATACCAC TGAGGCCGCT TTGCAGGCGG TACTCAGTGC TGTTGGCCGG TCCATTGCAA AAAACGACGC ATGGAGCGCA TCGGCAGGAC GGCAAGTGCG CTGA
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Protein sequence | MGTFNHRRYR AFAPVHKPNR RWPNRRMHHA PVWSSVDLRD GNQALLSPMS VEQKLRMFDL LVRMGFREIE VGFPAASQPD FDFVRRIIEE DRIPEQVTIQ VLTQAREALI DRTYEALKGV RRAIVHVYNS TNPAQREQVF GLDREGIQDI AVRGAEWVKD GAARCPETEW VFQYSPESFS ATEPDYAVEI CEAVNAVWRP DQGQAVILNL PATVESSMPN VFADQIEWFC DHLRGREHVK ISVHNHNDRG CAVAAAELAV LAGADRVEGT LFGNGERTGN MDILTMAMNL YSQGIDPQLD MSMGTEIAEI YTTCTGMVVP PRHPWFGELV YTAFSGSHQD AIRKGMHHRR GREDAVWEVP YLPIDPADLG RRYEEVVRIN SQSGKGGVAH VLERDHGISL PRWLAQDFSA VVQATSEQET GEVSSAQIFA LFESHYCHTT EDWHLRRYRL SREGEQVAGT VVVGPEAQPH ILQGKGSGAV GALVDALIQS RGVRAEVEQF DQHALGSGTG ARAMACVRVR VDHGQARSAV AFGEDTTEAA LQAVLSAVGR SIAKNDAWSA SAGRQVR
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