| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1628 |
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| Symbol | |
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| ID | 6877608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1594299 |
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| End bp | 1595801 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642789495 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_002220057 |
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| Protein GI | 198283736 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00771232 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000235169 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTTCGG ATGGGAGGCT GTGGAAAGGG GATGGAGGCC GGTTATGGCG GTATTTTTTT
GTCGGGATAT TGCCGTTTTT CTGGCTTATG CCCGCTATCG CCGCTACCGG CCAGAAGGAC
GCAAACACCC AGTTTGGCGA CGGCCAATGG AGTATTCTGA TTCAGGATGT GCAAAAGGGC
AGGCCCACTC TGAGTGTGCA GGCAGATCAT GGACAACTGC CTGCGTCCAC AGCGAAGCTG
CTGACCACAG CGTATATTCT GCACGAACTG GGGCCTGAAT CTCACCAGAA AACTCGGATA
CTGGCCCGGA CCATCGATGA TGGCGTAGTG CGGGGGCCCT TGATTTTTCT GGGGGGTGGC
GACCCCGATC TTTCCAGCCG TCGCTTCCCG TTTGTCAGGC GAACAGTACG AGATGACCCC
ATGTACCCTA TGCGCATGCT TGCCGCTCAA GTATGGGCTG CGGGTGTTCG CCAAATTCCG
GAGGGTATTC TGGCCGATGC CACGTACTTT CCCGCAGATA GCGCGCTACC GGGTTGGACG
GAACAGGATC AGCGCTATTG GTATGGCGCA CCGATCCATG CACTCATGTT CAACGACGCC
ATGATCGCGG TACGAATCAG ACCGGGGCGG GCCCCGGGGG TACGCACCAA CGCCGAGATC
ATGCCCAACC CGGGAGGGTT CATTCGGAAC ACGGTGATCA CCGTTTCGGC GGAGGATCCC
ATTCGTCCCG TACGCCTGGA AAAATCTGGA AGCGGATATC TATTGACTGG CGCGATTTCC
GCCAAGGGCG GTATTTTTGC CGCGATGCTG GCGCAGCCTG ATCCAGCCTA TTTTGCCGCC
GTAGCATTGC GACAGGCTTT GGAGGAAAAG GGTATTCTTG TAGGTAATCC TATCCAAGCA
TTGAACAACA AGCGCGGTGC AAAGCAGTCC AGGGGATATG CGCACTATGC CTTATTGGCC
AAACACGAGT CACCGCCATT GGTGGAGGAG ATCACGGTGG CCAACAAGGT GAGTGAAAAC
ACCCATGTAG AAGTACTGCT CCGGGATGCG GATCTGGCTC GCGGCGGTGA TGGAAGCCGT
GCATCGACCA TGCAGGGCTT GCACCGTTGG CTTTCTGTGA ACGGTATACT TGACACCCAA
TCTCGACTGG TAGATGGCTG CGGATTATCT CGTGAGGATC GCCTCAGCGC CGCAGATCTG
GTGCGTATGC TGTTGCACTC TTATCAGGAA CCCTGGGGGG GCTCCTGGCG CGATTCGCTG
CCGGTCAATG CCGAAGATGG AACGCTCCGG CATCGTCTGA GCGCTCTGCC TGCGGGTACG
GTGCAAGCCA AAACGGGTAC TCTGCGCGAT GCGTTGTCTC TTGCTGGTTT TATTCGGGAT
AACCTCGGCC ACCCACAATA TGCGTTTGCC ATTTTGGTTG AACATTTCCG AGGCTCTGAA
GAGCGTATCC GCAGACGAAT GGACGCCCTG GTGCAGCGTG TCGCTTTGAG CGGCCCCATG
TAG
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| Protein sequence | MRSDGRLWKG DGGRLWRYFF VGILPFFWLM PAIAATGQKD ANTQFGDGQW SILIQDVQKG
RPTLSVQADH GQLPASTAKL LTTAYILHEL GPESHQKTRI LARTIDDGVV RGPLIFLGGG
DPDLSSRRFP FVRRTVRDDP MYPMRMLAAQ VWAAGVRQIP EGILADATYF PADSALPGWT
EQDQRYWYGA PIHALMFNDA MIAVRIRPGR APGVRTNAEI MPNPGGFIRN TVITVSAEDP
IRPVRLEKSG SGYLLTGAIS AKGGIFAAML AQPDPAYFAA VALRQALEEK GILVGNPIQA
LNNKRGAKQS RGYAHYALLA KHESPPLVEE ITVANKVSEN THVEVLLRDA DLARGGDGSR
ASTMQGLHRW LSVNGILDTQ SRLVDGCGLS REDRLSAADL VRMLLHSYQE PWGGSWRDSL
PVNAEDGTLR HRLSALPAGT VQAKTGTLRD ALSLAGFIRD NLGHPQYAFA ILVEHFRGSE
ERIRRRMDAL VQRVALSGPM
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