Gene Lferr_1591 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1591 
Symbol 
ID6877569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1552154 
End bp1553872 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content63% 
IMG OID642789456 
ProductDNA polymerase III, subunits gamma and tau 
Protein accessionYP_002220020 
Protein GI198283699 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR00678] DNA polymerase III, delta' subunit
[TIGR02397] DNA polymerase III, subunit gamma and tau 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.382177 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.054959 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCCT ATCTCGCGCT GGCCCGCCGC TGGCGACCCC AACATTTTGA CGATTTTGTC 
GGGCAGGAGG CCGTCGTCTC CGCCTTGCGC CATGCCCTGG ATTCCGGCCG CATCCATCAT
GCTTTTCTGT TCACCGGCAC ACGGGGCGTC GGCAAGACGA CTCTGGCGCG GCTGCTCGCC
AAGTGTCTGA ACTGCGAGCG AGGCGTGAGC AGCAACCCCT GCGGAGAGTG CAGCGCCTGC
CGCAGTATTG CTGCAGGGAA CTTCGTGGAT CTGCTGGAGG TGGACGCGGC AAGCCGTACC
CGGGTGGATG AGACCCGCGA CCTTCTGGAC AATGTCCAGT ATGCGCCTAC GGCTGGTCGC
TACAAGGCGT ACCTCATTGA CGAGGTGCAT ATGTTATCTG CGCACAGCTT CAATGCGCTG
CTGAAAACCT TGGAAGAACC GCCGGAACAT GTCAAATTTC TGCTGGCGAC TACGGACCCA
CAGAAGCTGC CGATAACCGT GCTCTCCCGC TGCCTGCAGT TTAATTTACG TCGCCTGGAT
GTTCCCCAGA TTCAGGGAAG ATTGCGGCAG ATCATGTCGT TGGAACAGGT GCCGGCGGAG
GACGCCGCCC TGCAGATACT ATCGCGCGCT GCCGACGGGA GTCTGCGTGA CGCCTTGAGT
CTGCTGGATC AGGCTATTGT CCACGGTGGT GGCGCGGTGC GGCGCGACGG CGTGCTCGCG
ATGCTGGGGC GCAGCGGCGA TGACGCGGTG CTGGGTCTGA TCGCCGCGCT GGTGGACCGA
GATGCTGCAC AGGTATTCGC CATAGTGGGT GATCATCTGG CGCGGGGCAT GGACGGGCCC
GGCCTGCTGG ACCTGGTCAT AGAAGGCCTG CATCGCATCG CTCTGGCGCA ATTTCTTCCA
GCCGATCCGG ATGACGATGG CGCCGAGGCG GTCGTGCATC TGCGCGGGAG AATCAGCCCG
CTTACCCTGC AGTCCTGGTA TTTTTTGCTC CTTTCGGCAC GACGTGACTT TGCGCTTTAT
CCAGATGATC GCATGGCGCT GGAGATGGCC TTTCTGCGGG TGTTGAGCTT TTCCGGTTCA
GCATCGCCCG ACTCGCCGCC AGCGGCCCTC CCGGGCGGGG AAAACCGGCA TCCTGGCGAG
TCACTTCCCC CGACGCGCGA ATTCGTTATG CCCGAGGCAA CTTCACCGCT ATCGGATCAT
TCGGTTCCCC TGCTCTCCAT CCGTTCACGG GATGAAGTCC GGGAGCCGTC GCCGGTAGCG
ACGTCCGGTC AGCGCGATGC GGATGCCGGG ACCGCGCCAG CAGCAGACTG GCGTCGCGTA
CTGGCATCGC TGGCGGTGTC GCCGATGATT GCCGAGTACC TGCGCTACGG ACAAGCCCTG
CGCTGCGATC CGGAGGCGGT GGAGTTGGCC GTGGAGCCCA ATTATTTGCC GTTCCTTCTC
AAGACCGAGG CCCGCCGGGC GTTACATCAG GCGCTTACGG CATATTACGG CCGGGAGCCC
AGGCTCAGCA TTGTTGCTCT CACCATAGAG ACCGGGGTGG GCAGCCTGGT GCAGGAAGAC
CGGGCGCAGC TGGCGTCCCG GCAAGCTGCA GCAGAGGCAC GTGTGGCCGC GGATCCGCGC
ATCGGCGCGT TCCTCGAAGC CCTGGATGCC CGCGTAGAAT CCATTGAAAT CGTGGCGGCA
TCCTCAAACG ATATGCCGTC AGCTCACAAT GAAACGTAA
 
Protein sequence
MSAYLALARR WRPQHFDDFV GQEAVVSALR HALDSGRIHH AFLFTGTRGV GKTTLARLLA 
KCLNCERGVS SNPCGECSAC RSIAAGNFVD LLEVDAASRT RVDETRDLLD NVQYAPTAGR
YKAYLIDEVH MLSAHSFNAL LKTLEEPPEH VKFLLATTDP QKLPITVLSR CLQFNLRRLD
VPQIQGRLRQ IMSLEQVPAE DAALQILSRA ADGSLRDALS LLDQAIVHGG GAVRRDGVLA
MLGRSGDDAV LGLIAALVDR DAAQVFAIVG DHLARGMDGP GLLDLVIEGL HRIALAQFLP
ADPDDDGAEA VVHLRGRISP LTLQSWYFLL LSARRDFALY PDDRMALEMA FLRVLSFSGS
ASPDSPPAAL PGGENRHPGE SLPPTREFVM PEATSPLSDH SVPLLSIRSR DEVREPSPVA
TSGQRDADAG TAPAADWRRV LASLAVSPMI AEYLRYGQAL RCDPEAVELA VEPNYLPFLL
KTEARRALHQ ALTAYYGREP RLSIVALTIE TGVGSLVQED RAQLASRQAA AEARVAADPR
IGAFLEALDA RVESIEIVAA SSNDMPSAHN ET