Gene Lferr_1580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1580 
Symbol 
ID6877556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1542652 
End bp1543677 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content58% 
IMG OID642789444 
Productfatty acid/phospholipid synthesis protein PlsX 
Protein accessionYP_002220009 
Protein GI198283688 
COG category[I] Lipid transport and metabolism 
COG ID[COG0416] Fatty acid/phospholipid biosynthesis enzyme 
TIGRFAM ID[TIGR00182] fatty acid/phospholipid synthesis protein PlsX 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.152693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0141815 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCATA TTGCGGTAGA TGCCATGAGT GGCGATTCCG GCCCGTCGAC AGTGGTGCTT 
GCCATCCGTG ATCTGCTCGA GGATCACCCC GATGTCATAT TTCACCTGGT CGGTGATACG
GTTTCCCTTC AGACGGAGCT GGAGAAAGCA CACCTCCACG GATCGGATCA GGTCGTCGTG
CACCACGCCA GCCAGGTGGT GGCAATGGAT GAGACGCCGT CCCAGGCCCT GAGGGGCAAA
AGGGACTCGT CTATGCATGT CGCCATCAGT CTGGTGCGGG AAGGGCATGC CGATGCTGTA
GTCAGCGCAG GCAACACCGG TGCCCTTATG GCACTTGGAA AAGTGTTTCT TCGCACCATT
CCCGGAATTG ACCGGCCAGC CATTGCCGCT TTTCTGCCGA CGACCACAGG GCGTTTCCTC
GCACTGGATC TGGGTGCAAA TGTGGATTGT CGCCCGGAAC ATCTCCTGCA GTTCGCGGTA
ATGGGCTCGA TACTCGCTGA GCGGGTCATG GGTGTGACCA AGCCCCGCGT CGCCCTGCTC
AACATCGGCT CTGAAGAGAT CAAGGGCAAT GAGCAGGTCA AAGAGGCGGC ACTTCTGTTG
CGTGCCGCCA GGCTGAATTT CATCGGCAAT GTAGAAGGTT CAGATATTTA CAAGGGAGTC
GCGGATGTGG TGGTTTGTGA CGGCTTCGTG GGTAATGTGG CGCTCAAGAC CTCAGAGGGA
CTGGCAACGA TGATCAGTCA CGAACTGCGC GCCAGCTATA CCCATGGCTG GTATGGGCGC
ATTGCTTATC TGATCAATCG TCCCATTCTG CAACGCCTGC GTCGCCGCCT GGATTCCCGT
CAATACAACG GCGCCACGCT GCTGGGATTG AACGGGATCG TCATCAAGAG CCACGGAAAT
GCGGATCGTT TTGCCTTTGC CTGCGCAGTG AAAGTGGCGA TCACTGAGGC CAAACACCGC
CTGACCCTGC GTATTGCGGA AGTGATCCAG GAGAATCTCG ATCCGGCGGT GCGAAACAGC
GCGTGA
 
Protein sequence
MPHIAVDAMS GDSGPSTVVL AIRDLLEDHP DVIFHLVGDT VSLQTELEKA HLHGSDQVVV 
HHASQVVAMD ETPSQALRGK RDSSMHVAIS LVREGHADAV VSAGNTGALM ALGKVFLRTI
PGIDRPAIAA FLPTTTGRFL ALDLGANVDC RPEHLLQFAV MGSILAERVM GVTKPRVALL
NIGSEEIKGN EQVKEAALLL RAARLNFIGN VEGSDIYKGV ADVVVCDGFV GNVALKTSEG
LATMISHELR ASYTHGWYGR IAYLINRPIL QRLRRRLDSR QYNGATLLGL NGIVIKSHGN
ADRFAFACAV KVAITEAKHR LTLRIAEVIQ ENLDPAVRNS A