| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1569 |
|---|
| Symbol | |
|---|
| ID | 6877545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1533788 |
|---|
| End bp | 1534816 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642789433 |
|---|
| Product | transposase IS116/IS110/IS902 family protein |
|---|
| Protein accession | YP_002219998 |
|---|
| Protein GI | 198283677 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000196029 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTTA CAACATACGG ATTGGATTTG GCAAAAAGGG TCATGCAACT GCACTGGGTA
AACCTGGAGA CCGGCGAGAT TCACCGCAAA CAGTTGAAGC GCCGTGCACT CCTGGAGTTT
TTCGCCAACC GCCAACCGGG AATCGTGGCG ATGGAGGCTT GCGGTAGCGC CCACTATTGG
GGACGGGAAT TGCGTAAGCT GGGGCATGAG GTCCGCTTGA TTGCTGCCCA GTTTGTGCGT
CCCTTCGTGA AGACCAACAA GAACGATGCG GCCGATGCGG CAGCGATCTG GGAAGCCGTA
CAGCGGCCTG ATATGCGCTT CGTGGCGGTC AAGAGTGAGG AACAGCAATC CGTTCTGTCG
CTGCACCGTA TGCGGGAGCA ATTGATCAAG ATGCGCACTA TGCAGGTGAA CCAGATCCGG
GGCCTGCTCT ACGAATTTGG TGCTGATCTG CCGCAGGGCC GCCAGCGGGG GCTGAAAGAG
GTTCCTGATG CTTTGGCCGA CCTGGAAAAA TCGATATCGC CCATGCTGCG GGACACGGTT
CGTCAGCAAT TAAAACGTCT TGAAGAGATG GACAAGGATA TTGCGGATAT CGAAAAGCGT
TTGACGCTGT GGAAGAAAGG CCAAGAGGCC GTGACTCGAT TGATGGCTAT CCCCGGCGTG
GGGCTACTTA CGGCAACTGC CATTATCGCC ACCGTGGGAG ATATGAAGTC CTTTCGTTCA
GGACGGGAGT TTGCGGCGTT TCTGGGGCTG GTTCCCCGCC AGAGTGGGAC CGGTGGCAAG
GTCCGATTAC TGGGGATCAG CAAACGGGGG GATACCTATC TCCGAACATT GCTGACCCAT
GGAGCCAGGG CGGTGGTGAA CTTCCAGATC AAGAATCGGA ATCCCTGGAT TGACAAACTG
CTCAGTCGGC GACCCCATAA TGTGGTGGTC GTGGCACAGT CCAACAAGAT GGCGCGAACC
ATCTGGGCGC TGCTGGTGAA AAACACAGAA TATGTGGCCA ATCACGCTAG GAATGCGGCC
GCCCTATAG
|
|---|
| Protein sequence | MQVTTYGLDL AKRVMQLHWV NLETGEIHRK QLKRRALLEF FANRQPGIVA MEACGSAHYW
GRELRKLGHE VRLIAAQFVR PFVKTNKNDA ADAAAIWEAV QRPDMRFVAV KSEEQQSVLS
LHRMREQLIK MRTMQVNQIR GLLYEFGADL PQGRQRGLKE VPDALADLEK SISPMLRDTV
RQQLKRLEEM DKDIADIEKR LTLWKKGQEA VTRLMAIPGV GLLTATAIIA TVGDMKSFRS
GREFAAFLGL VPRQSGTGGK VRLLGISKRG DTYLRTLLTH GARAVVNFQI KNRNPWIDKL
LSRRPHNVVV VAQSNKMART IWALLVKNTE YVANHARNAA AL
|
|---|
| |