Gene Lferr_1543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1543 
Symbol 
ID6877518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1496554 
End bp1497171 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content60% 
IMG OID642789406 
Producttranscriptional repressor, LexA family 
Protein accessionYP_002219972 
Protein GI198283651 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00734536 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGAAC TTACCCCCCG GCAGTCCGAA ATTCTCGCCT GGATTCGTGC CCGCATGGCG 
GAAGACAGCC TGCCGCCTAC CCGTGCGGAG TTGATGCGGG CCTTTGACTT CCGTTCACCC
AATGCTGCCG AAAGTCACCT GCGGGTATTG GCGCGCAAGG GCTATATCCT GCTGCAGAGT
GGTACGGCCA GGGGCATCCG CCTCTGTGCA AGCGAAGAAG AAACCGGGTT GCCGCTGATC
GGGCGAGTGG CCGCCGGGCA ACCCATGCTG GCCGAAGAGT TCCGGGAGGG ACAGTTGCCC
GTCGACCCAA AGCTCTTTTC GCCAGGGGCC GATTACCTGT TGCGGGTGCA GGGCATGAGT
ATGCGTGATG CCGGCATTCT CGATGGCGAT ATTCTCGCCG TCCGTCATGA CGCCTCGCTC
ACTCTCCAGG ACGGTCAGAT GGTCGTGGCC CGGGTCAACG GCGAGGTGAC GGTCAAACGC
TGGAAGCGGG ATGGCAAGCA GGTCTGGCTG CTGCCGGAAA ACCCGGATTT CTCTCCTATT
TCTGTGGATT TGCAACGCGA TAGTCTGACA ATAGAAGGCG TGGTGGTCGG ACTGCTGCGT
ATTGGAGGCA ACTTATGA
 
Protein sequence
MDELTPRQSE ILAWIRARMA EDSLPPTRAE LMRAFDFRSP NAAESHLRVL ARKGYILLQS 
GTARGIRLCA SEEETGLPLI GRVAAGQPML AEEFREGQLP VDPKLFSPGA DYLLRVQGMS
MRDAGILDGD ILAVRHDASL TLQDGQMVVA RVNGEVTVKR WKRDGKQVWL LPENPDFSPI
SVDLQRDSLT IEGVVVGLLR IGGNL