| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1415 |
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| Symbol | |
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| ID | 6877389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1372189 |
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| End bp | 1375326 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642789287 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002219854 |
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| Protein GI | 198283533 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTATA AATATAGTAC CGACAACGTC CAGGGACGCA GTTTGAATCA CTCGCACCAG
CAATCGCCCC GACACAACTC CTATGTCCCG CGCTGGCTGC ACCGGCTTTG GCTGGGTTTC
ATGGCGGTCG TGTTGGTGGC AGGGGCATGG CTGGCCTGGT CCGACTGGCA GCAAACCCGG
TCTTGGGAGA TATCCGGCCT TCGGACGCTG GTGGCATCGG TGGCGGAGGG GACGCGGGTG
ATGCTGGATG GCACCCGGAT CTCGCTGGTG TTGCTGGGGC GGCAATTGGA GTCGGGTTCG
CCGGTCCTGG GCCCCGGCGC AGGAAAAATG CTGCGGGACT ATCTCGCGCT GCAGCCGGAT
CTGGCCGCTG TGGGGACCCG CATACCCGAT GGGCAGGTGC TAACGGCAGG CGGAGGCCGG
CATTTCCTCG CCGATCTCCT GTTTGCCCTC GATAACCCGG TGAATGCCCG GCGGCTGGGG
CTAAATCCGG TGCAGCGGAG CGCGCTGGCC CAATGCCTGC ATTCCCCGGG CTTCTGCCTT
GGCCCTCCGG TACGCGATGT TTTCGCCGGG GCCGGTCATG GCCTCTGGAT GATCCCCCTC
TTTCAAGTAG TTCCGATCAA GGGCGGCAGC CGGCAATTGG TCGCCTTGCT GCCGCTCGTG
GACGGTCGCA TGCCGTCCTG GCGGGGGCTG CCGCTGCCAT CCCGGGTGTC CATCTTCCTG
CTGCGGGACG ACGGCTTCCT GGAAAGCCGT TCTCCGCCGC CCACCCAGAC CACTTACGCC
GTCCGCCAGC ACGGCATTGC CGCGCGCTAT GTCCTTGCCC ATCCGGAACT GCCGTCGGGC
GTCTATTATG GCCTGTCCAC GGCGGTGGAC CAGTGGCGCC TGGGTGCCGT GCAGCGGATC
AAAGGCTATC CCCTGGTGGC AGGGGTGGGC ATTCCGCGTT CCGTTTTGTG GGCGGACTGG
TGGAATAGCG TCGAGGGGCC AGCCGCCGGT GCGTTCGGTC TGCTGCTGTT GTCCATCTTC
GGCTACGGCT ACCTGCGGCG GGTCGGCCGA GAGCGGGAGG GGGAACGGCA AAGCGCGGAG
CAGACCCTGT GGGAGGAGAA GGAGCGGGCG GAAGTCACCC TGCATTCCAT CGGGGATGCG
GTGATCACCA CCGATACCGA AGGCCGGGTG ATGGACATGA ACGTCGTCGC CGAAGCGTTG
ATGGGCTATG CCCGGACGGA AGCCGTGGGC AGGCCCCTGG AAGACGTCTT CCGCATTGTC
CAGGAAGGCA GCCATGCTCA TTTGGACAAT CCCGTCCGGC GAGTTCTGGA AGAGGGCCAG
GTGGTGAGGC TGGCCAACCA CACCATGCTC CTCACCAAGG ACGGCCAGGA ACGCGCCATC
GAGGACAGCG CGGCGCCCAT CCGAGACCGG CAGGGCGTAC TGTTGGGCGT GGTCCTGGTC
TTCCACGACG TCACCGAGAA GCGCCGGCTG ATCGCCGAAC TGGCCCATCA GGCCACCCAC
GACGCCCTCA CGGGCCTCCC CAACCGGGTG CTCTTCATGG ACCGGCTGGG CCATGATCGA
GCCCAGACCC TGCGCCATGA GCACCTGCTG GCGGTGGGTA TCCTGGACCT GGACGGCTTC
AAGCAGGTCA ATGACCACTT CGGACATGCC GCTGGCGACG CCCTGCTGCA GGAAATGGCA
CAAAGGTTGC GTAGGGAAAT GCGTTCCGGG GACACCTTGG CACGCATGGG CGGCGACGAG
TTTGGGCTGC TCCTCTCGGA TGTCGGGAGC CTGGAACAGG TGGAAGACGC CTGCACGCGC
CTGCTGGAAG TGCTCCGCGC TCCCTTCTAT CTGGGAGACG AGGAGATCCC GCTGTCCTCC
AGCATCGGCC TGACCAGCTA TCCGCTGGAT GACAGCCTGC CGGAGGACCT CCTGCGCCAT
GCGGATCTGG CCCTCTATGC GGCCAAGGCC GCCGGGCGGG ATCGCTATCA TTGGTTCGAC
TGGCCGATGG ACAAGCTGCA GCAAGAGGCC ATGGAGGTGC GGAAGATGAC GGAAAATGCG
CTCGATCGGG GCCGCCTGCT GCTCCACTAT CAGCCCGTGG TGGAGATCGG CAATGGTCCC
GTGGGCGTGG AGGCCCTGAT CCGCCTCGAC CACCCCGAGC GCGGCCTGCT GCCTCCCGCC
GCCTTCGCCG CCGCCCTCGA CGCACCGCGC CTGACCCGGC ACATCGGCTG CTTCGTGCTT
GCCACGGCTC TGACCCAGAC CCAGACTTGG CATCGGCAGG GCATGCCCTT GCGCGTCTCG
GTGAATATCA GCGCCCACCA TCTCCTGGAC CAGCGCTTTC TGTCCGACCT GCGGGCCGCC
CTCGACGCCC ATCCGGATCT GCCCCCATCC GCCGTCGAGA TCGAGATCAC TGAAACGGCC
CCGCTGCTGG ATTTCGCCGG GGCGCGGGAA ACCCTGCTGG CCTGCAACCG CCTGGGAGTG
CGCATCGCCC TCGACGACTT CGGCACCGGC AACGCCTCGC TGACCTATCT GCAGAAGCTG
CCCGCGCAGA CCATCAAGAT CGATCAGAGC TTCGTGCGCG ACATCATCAA CGATCCCAAG
GATTACGCCA TCGTCTCCGG CGTGGTCACC AGCGCCCGAC TCTTGGGCCT GGAAGTGATT
GCCGAAGGGG TGGAAACGGC CGAACACGCC GCCATGCTTG GCCACTTGCA GTGCCACTGC
CTGCAAGGCT ATGCCATCGC CCGGCCCATG GCACCGGAAG CGATCCCGGG TTGGATCAGA
CAGTATAAGC CTTTGCTTTA TCATGGTTTT TCTGCAACGC CTACCCCAAC TAGCATGATT
TCAATTCATA ATCAACGTGT TAAAAGATTT ATTGGAGCGC TGCGCCACCA GGCTCCCTTT
CCCTCCTTGG TCATCGAACC CGAGGCGGAG CAGCAATGCC ATTTGGGACT ATGGTTGCAA
GGGGAAGGAA GGCTCCAATA TGGGGACGAC GCGGCCTTCT ACCAGCAATT GCTGGCACGG
CACGCCCATC TGCACGCCCT AGCCCGGGAA GCCAAGGCCC TGTACGACGC GGGGGACGGG
GAAGGGGCGG AGCAGAAAGG GGCGGAGTTG GAACGGGAAA ACCAAGCGCT GAACTCGCTC
ATCATCACAA CTCATTGA
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| Protein sequence | MFYKYSTDNV QGRSLNHSHQ QSPRHNSYVP RWLHRLWLGF MAVVLVAGAW LAWSDWQQTR
SWEISGLRTL VASVAEGTRV MLDGTRISLV LLGRQLESGS PVLGPGAGKM LRDYLALQPD
LAAVGTRIPD GQVLTAGGGR HFLADLLFAL DNPVNARRLG LNPVQRSALA QCLHSPGFCL
GPPVRDVFAG AGHGLWMIPL FQVVPIKGGS RQLVALLPLV DGRMPSWRGL PLPSRVSIFL
LRDDGFLESR SPPPTQTTYA VRQHGIAARY VLAHPELPSG VYYGLSTAVD QWRLGAVQRI
KGYPLVAGVG IPRSVLWADW WNSVEGPAAG AFGLLLLSIF GYGYLRRVGR EREGERQSAE
QTLWEEKERA EVTLHSIGDA VITTDTEGRV MDMNVVAEAL MGYARTEAVG RPLEDVFRIV
QEGSHAHLDN PVRRVLEEGQ VVRLANHTML LTKDGQERAI EDSAAPIRDR QGVLLGVVLV
FHDVTEKRRL IAELAHQATH DALTGLPNRV LFMDRLGHDR AQTLRHEHLL AVGILDLDGF
KQVNDHFGHA AGDALLQEMA QRLRREMRSG DTLARMGGDE FGLLLSDVGS LEQVEDACTR
LLEVLRAPFY LGDEEIPLSS SIGLTSYPLD DSLPEDLLRH ADLALYAAKA AGRDRYHWFD
WPMDKLQQEA MEVRKMTENA LDRGRLLLHY QPVVEIGNGP VGVEALIRLD HPERGLLPPA
AFAAALDAPR LTRHIGCFVL ATALTQTQTW HRQGMPLRVS VNISAHHLLD QRFLSDLRAA
LDAHPDLPPS AVEIEITETA PLLDFAGARE TLLACNRLGV RIALDDFGTG NASLTYLQKL
PAQTIKIDQS FVRDIINDPK DYAIVSGVVT SARLLGLEVI AEGVETAEHA AMLGHLQCHC
LQGYAIARPM APEAIPGWIR QYKPLLYHGF SATPTPTSMI SIHNQRVKRF IGALRHQAPF
PSLVIEPEAE QQCHLGLWLQ GEGRLQYGDD AAFYQQLLAR HAHLHALARE AKALYDAGDG
EGAEQKGAEL ERENQALNSL IITTH
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