| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1398 |
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| Symbol | |
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| ID | 6877372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1353834 |
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| End bp | 1356320 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642789271 |
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| Product | TRAG family protein |
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| Protein accession | YP_002219838 |
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| Protein GI | 198283517 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.277319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAA AGATCCACGC CCCTGACAGA TCCGTCTCCG ACTACAAGGT CCAGCGCCTC
GCCCGGGGCG GCAGGCTCAA GACGACGCTC GCCGGCGTTG CGGCGGGCGT TCTCGGTTAC
ACGTTGGGCA TATCCTATGT GGCCAGGGAC GTGTTTCCCG GCTACCAGTG GACCGATGAT
TTCATCCAGA AGGCGCATGC CTACATCGCA TTGCCCTACG GCTGGCGGCT ATATGATCCC
CTGCCGTTCC TGCGGCCGAT GATCCTGAAC ATCCACTATC CAGTGATTCA TCAGGCGTTC
TATGACGCCG GTCTGCCGGC CGTGGTGCTG GGCATACTCA CGGCGGGGAT ACTTGGGAAA
AAGCACAAGG ACGCGCAAAA AGCCGTCCTG GACAATCCTG TGCATGGCTC AGCGCATTGG
GCGGGTAAAA GTGATGCGAT CCGGGCGGCG CTCCTGCCTT CTCCACCGCC AAAGACGGTA
ATGGACTCCC TGCGCCCCTG GCTTGGCATG CACCCTGCGA AGGGCATGCA CCCTGCAAAG
GGCTTACACC CTGCAAAGGG GCTCAAGGGA GGTTCCGACT GGGCCCGCTG GAACGACCGG
CAGGAAAAGC GGAAAAAGGA GGCCGCCGAG TGGCGGAAGA GGAGGGCGGA GAGGGAGAAG
AAACGCCTGT CGGAGATCCC GGAGCCGACG GTTTTCGACC GGTTCGACTC CCCCCATGTC
TGCTATGTGG GGGCCTTCGT CGAGAACGGC GCGGCCACTC CACTCCAGCA CACTGGAGCG
GAACACATCC TGGTCTTTGC CCCGACCCGG TCGGGCAAGG GCGTGGGCCT GGTGCTGCCC
ACGTTGCTGG ACGGCTGGAT GGACTCGGTG GTCGTGCATG ACATCAAGGG GGAAAACTTC
AACCTGACGG CGGGCTATCG CAAGGCCATG GGCCACCACA TCCTGAAGTT TTCACCGGGA
TCGGTATCCG AAGAAGGTTG CCACTTCAAC CCGCTGGACG CGGTGCGTGT CGGAACCCAA
TACGAAGTCA AGGACGTGAT GAACATTGCC ACGATGATCG TGGACCCGGA TGGCAAGGGC
CTGAACGATC ACTGGCAGAA AACCGGTTTT GCCCTGCTCA CGTCCATCAT CCTGCATGTG
CTCTACGCCA TGCCGGACAA GACCCTGCGG GGCGTCGCCG CCTACCTCAA CGATCCCACG
CTGGAAAGCG TGGACGTAGC CTTTGAGCGC ATGATGCAGA CGGAGCATGA CCCGGATGAG
CAATATGGCT GGAGGGACGG CAACGGCCAG TGCTCCAGGG TCCATCCGGT CATCGCGCAA
TCCGCGCGGG AGATGCTGAA CAAGGCCGAG AATGAAAAAT CGGGCGTCAT TTCGACCATG
ATGAGCTTCC TGTCCCTCTA CCGCGATCCC ATCGTCGCGA AGTGGACCGA GTATTCGGAC
TTTCGCATCG CCGACCTTCA GGACGCCGAA CAACCCGTCT CCCTGTACCT GGTCACCAGT
CCGGAAGACA AGAACCGGCT CAAGCCCCTC ATTCGTCTGG TGCTCAACCA GATTGCCTCC
CAGTTCACCG CGGAAGAACG CCTGGAAGCG AAAGACGGGC GAATCGTCGC CAAGGGAAAG
CATCGGCTGC TCTTGCTGCT CGACGAATTC CCGAGCCTGG GCAAACTCGA TGTGTTCCTG
GACAGCATCG CCTTCCTCGC AGGCTACAAC GTCAAGCTGT ACCTCATCAC CCAGGATATC
GCCCAGCTGG AAGATGAAGG CCACGGCTAC GGCAAGGCCG GGGCCAAGAC CATCATCGGC
AACTGCCACA TCCGGGCGGC CTACGCGCCC AACCAGGTCG AGACGGCCAA GTGGATCTCC
GACATGCTGG GCACCCGTAC GGTGACCATG GAAAACGACA ACCAGAGTTT TGACGGCTCC
CTGTTCGGTC AGAACAAGGG CTATTCGACG AGCCTCAGCT ACCAGTCCCG CCCCCTGCTG
ACGGCGGATG AGGTCATGAC CTTGCGGGGA CCGGAAAAGG AAGGTGCCAA TATCCAGACC
CCGGGCGATA TGCTGGTATT CGCGGCGGGC TTTCATCCCA TCTATGGACA GCAGCTGCTC
TATTTCAAGA ACCCGGAATG GCTCGAGCGT GCATCCATTC GGTGGCCAGA GAAGAGCGAT
TCCATCCCCG GAGCCAGGAA AGACTACAAG GCCATACTGG GTGAGTCGGG TGGAACGCTA
CCCATCCCCC ATATCGAGAA AAAACCGGAA GGGCAGGATC CTGTCGAGGA AGTAAGCGAG
GCTGAAAGGG CGGCATTGGC CGCGGCGGCT GGCGATCTGG ACGCCGTGGC AGGAGAGTGC
AAGCCCCTCG CGGGGTGCAA GCCCTTTGCT GAGTGCAAGC CACTCGCGGG GCGCAAGCCC
ACGGGGGACG GGAAATATGA CACGTCCGAG CGGGACGCGG AGAGAGGCGT TATCGGGGGG
TTGATGGGGG ATGACGGCGA CGGATGA
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| Protein sequence | MTEKIHAPDR SVSDYKVQRL ARGGRLKTTL AGVAAGVLGY TLGISYVARD VFPGYQWTDD
FIQKAHAYIA LPYGWRLYDP LPFLRPMILN IHYPVIHQAF YDAGLPAVVL GILTAGILGK
KHKDAQKAVL DNPVHGSAHW AGKSDAIRAA LLPSPPPKTV MDSLRPWLGM HPAKGMHPAK
GLHPAKGLKG GSDWARWNDR QEKRKKEAAE WRKRRAEREK KRLSEIPEPT VFDRFDSPHV
CYVGAFVENG AATPLQHTGA EHILVFAPTR SGKGVGLVLP TLLDGWMDSV VVHDIKGENF
NLTAGYRKAM GHHILKFSPG SVSEEGCHFN PLDAVRVGTQ YEVKDVMNIA TMIVDPDGKG
LNDHWQKTGF ALLTSIILHV LYAMPDKTLR GVAAYLNDPT LESVDVAFER MMQTEHDPDE
QYGWRDGNGQ CSRVHPVIAQ SAREMLNKAE NEKSGVISTM MSFLSLYRDP IVAKWTEYSD
FRIADLQDAE QPVSLYLVTS PEDKNRLKPL IRLVLNQIAS QFTAEERLEA KDGRIVAKGK
HRLLLLLDEF PSLGKLDVFL DSIAFLAGYN VKLYLITQDI AQLEDEGHGY GKAGAKTIIG
NCHIRAAYAP NQVETAKWIS DMLGTRTVTM ENDNQSFDGS LFGQNKGYST SLSYQSRPLL
TADEVMTLRG PEKEGANIQT PGDMLVFAAG FHPIYGQQLL YFKNPEWLER ASIRWPEKSD
SIPGARKDYK AILGESGGTL PIPHIEKKPE GQDPVEEVSE AERAALAAAA GDLDAVAGEC
KPLAGCKPFA ECKPLAGRKP TGDGKYDTSE RDAERGVIGG LMGDDGDG
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