Gene Lferr_1392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1392 
Symbol 
ID6877366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1348580 
End bp1349248 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content60% 
IMG OID642789265 
Productconjugal transfer protein 
Protein accessionYP_002219832 
Protein GI198283511 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAGCA ATCCCGATTA TCTGGCTGCC CGCCAGGAAT GGCTTGAGCG CTACGGCTCC 
TACATCGCGC AGGCGAGAAA CTGGCGCATC GCTGCCCTGT CGGCTATCGG CATTGCCGCC
CTGTTTGGGG CGGGCATGGT GTACGAGGCA GACCGTGTCC ATATCGTGCC CTATGTCGTC
GAAGTGGACA AACTGGGCAA GGCTGTGGAA CTGGCGCAGG CCGTGCGGGC CGGTTCTTTC
GCCCAGCCGG TAGTGCAGCA CATCGTTTCC CGCTTCACCT GGCTCGCTTT CACGCGCAGC
CCGGACAAGC ATGTGCAGAA GCACTTCATC GATGAATCCT ATCATTACAT CGCATCGAGC
GCGGAATCCT CGCTGGACGC CTTCTACGCG CAGCACAATC CCTACGCGGC CTATTCCAAC
AAGACGCAGG GCAACACGGT CACGATCCAG AGCGCCGTTC CCGTTGGGCA GGTGACGGGC
AAGGGTGGCT CGTACATCGT CGATTTCCTG GTAAAGCACT ATGGCCCGCA TGGCGGCGTG
GATGGCGAGC AGAACTGGCA AGGCACGGTC ACTTACGCGA CGGTCCCGCC ATCGAACAAC
CCCAATGTCC TGAAAGGCAA TCCATTCGGC ATCTACATCA CGCACTTTGC TTTCAGTCCG
CAGGTGTAA
 
Protein sequence
MSSNPDYLAA RQEWLERYGS YIAQARNWRI AALSAIGIAA LFGAGMVYEA DRVHIVPYVV 
EVDKLGKAVE LAQAVRAGSF AQPVVQHIVS RFTWLAFTRS PDKHVQKHFI DESYHYIASS
AESSLDAFYA QHNPYAAYSN KTQGNTVTIQ SAVPVGQVTG KGGSYIVDFL VKHYGPHGGV
DGEQNWQGTV TYATVPPSNN PNVLKGNPFG IYITHFAFSP QV