| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1339 |
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| Symbol | |
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| ID | 6877313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 1291361 |
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| End bp | 1293883 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642789213 |
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| Product | CagE TrbE VirB component of type IV transporter system |
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| Protein accession | YP_002219780 |
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| Protein GI | 198283459 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.18708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCCC TGAAACAGTA CCGCGATAAG GCCCTGGGCC TTCCCGATCT CTTGAACATC
GCTTTTCTGG TGGATGGCTG GCAGACGGAT GCCGGGGAAA TGGCCATCGC GCTGCAAAAA
GACGGGAGCT TTCTGGCGGG GTTCCGCTAT GACGGGCCTG ATCTCGAGAG CCAGTCCACG
CAGGATCTGG AGGCGCTCTC GGCCACCTGG AACAACGCCA TCGCTCGATT GGGCACAGAC
TGGGGTGTGC ATGTCACGGC GATTCGCGAG CCGGCCGACG GCTATATCGA CGAATCGGAG
TGCGCCTTTC GCGACCCGGT GTCGCGCCTC ATCGAGGCCG AGAGGCGGGC GCAGTTTGGA
TCGGAAACCC ATCACTATGT CAGCCGCTAT TACCTTACAG TTGCCTGGCG AACGCCCATT
GATGCGGAAG TGCAGTTGGT ACAGTCCATG ATCCAAAAGA AAGCCGGTAA ACAACCCGGG
CAGCTGGCCG ATGCGGCATT CCGGGACACG CTGGCCCGCT ACCGGCAGGT GATTGAAGTT
ATCCTGGGCA TTTTCAGGCA CGGATACCGG GTGAAGGCCA TGGATGCCGA CGCCCTGCTG
ACCCATATCC ATGAGTGCCT GACCGGCGCC ACGCATCGCG TCAATGCGCC CCGGATTCCG
GCGTATCTGG ATGCCCTCAT CGGGCACCAT GATTTTGTGG GCGGTCTGGA GCCGTCCATG
GACGGGGAAG AGATTCGCGT CGTAACGGTT CTGGGCTATC CCAGCATGAC CTTCCCCGAG
ATGCTGGAGA ACCTGCATAG CCTGCCCATT CCCCTACGCT ACACGCTCCG CTTCCTGCCC
CTTGATCCGC CGGATGCGGT GGCGGACATG GCGAAGATCC GGGATCGCTG GTTTGGCTCC
CGGGCCAACA TGAAATCCCT GCTTACGGAG AAGATGACGG GCGAAGCCCA GGGACAGTTG
TCCGCCGACG ATACGGTGGT GAACCTCGCC TATGACGCCA AGCAGGCCGT CAATGAGGCG
CGGGAGGGCG CTGTGAAGTT TGGCAACTTC ACGCTATCCG TCGTGCTGCG TTCCGCCGAT
GAAAAAGTGC TCGCGGACCG GATCAAGGCG ATCAAGACCT TCTTGGACAA TGCGGGCTAT
GTCGCCCACC TGGAAACGAC CAATACGGTG GAAGCGTTCC TGGGCAGCCT CCCGGGTCAT
CTCTATGAGA ACATCCGCCG GCCACTGATG CACTCGCTGA ATGTTGCGGA TTTCGCGCCC
AAGACGGAAA TCTGGGCCGG TGAAGCGCGT TGCCCGAGTC CGCTGATGAA TTTGTCTGAC
GGCCGCAAAG CTCCGCCCCT GCTGTACGCG GCGACCACGG GAAATACGCC CTTCCGACTG
AATCTCCATG TCGGCGATCT GGGGCACAGC CTGATTGCCG GCATGACCGG GGGCGGAAAG
AGTACGCTCC TGGCCCTGTT GGCCGCGCAA TGGCAACGTT ATCCCGACAG CCGGGTGATT
GCCTTCGACA AGGGCATGAG TCTCTACGCC CTCACGGAAG CCATGGGTGG GCAGCATTAT
GATCTGAACG GCCCGACCTC CGATCTGTTT TTTGCACCCC TGCAGCACGT CGATGATCCG
GCCGAGGCGG CTTTTGCGGC CGACTGGGTG GAAGCGTTGG CCACCTTGCA GGGCATGACG
ATCACCTCTA CGGAGCGTTC GGCCATTCGT GACGCTGTGC ATGGCCTGGC CCGGGAATCC
GGGCGCTCGC TCACGGCGCT GCTTCAGATG ATCCAGAACC GGGGGATCAA GGATGCCCTG
CAGTATTACA CCCTGACCGG GCAAACGGGG AAGCTGCTTG ATGCCGAGAG TGACGGGCTG
TCGATGGCCG ATGCGAGCAT GATCACTTTC GAGATGAGTC ACCTGATGAA CGGCGGCCCG
GCGGAGCACC GGGTAACGGT TCCGGTACTG CTGTATCTGT TCCACCGGAT CGAACAGATG
CTGGATGGGC GACCCACCCT CATTCTGCTC GATGAGGCCT GGACCTTTCT GGACAACGAG
CTGTTTCTGG CGAAGTTGCG TCAATGGCTG AAGGAACTGC GGAAGAAAAA CGCCGCCGTC
GTTTTTGCCA CACAGTCCCT GAATGATCTC AAGAACAGCT CCTTGCTCCC GGTCCTGAAG
GAGTCCTGCC CGACGAAAAT CTTCCTGCCC AACCGGGCTG CCACCAGTCC GGACCTCAAG
CCCCTGTACA TCGACATGGG GCTGAATGAT CGGCAAATCG AGCTGGTGGT GGCGTCCACG
CCGAAGCAGG ACTACTACCT GTCCACCCCA GAGGGGCAGC GCCGGATTCA GTTTGGCATG
GGTCCGGTCA CCCTGGCTTT TTGCGGTGTC TCCGATCCGC GTGAGGTCAA GAGGGTAGCG
GAGCTCAAGA CGCAGCACGG CGATCGCTGG CCGATCGCCT GGCTGAAAGA GCGGCTGTCA
CCCAGCATCC GGGATGGGTG GGTGAGCTAT GCGGAGTCCC TTTACCAGGG AGAACGGGCA
TGA
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| Protein sequence | MRSLKQYRDK ALGLPDLLNI AFLVDGWQTD AGEMAIALQK DGSFLAGFRY DGPDLESQST
QDLEALSATW NNAIARLGTD WGVHVTAIRE PADGYIDESE CAFRDPVSRL IEAERRAQFG
SETHHYVSRY YLTVAWRTPI DAEVQLVQSM IQKKAGKQPG QLADAAFRDT LARYRQVIEV
ILGIFRHGYR VKAMDADALL THIHECLTGA THRVNAPRIP AYLDALIGHH DFVGGLEPSM
DGEEIRVVTV LGYPSMTFPE MLENLHSLPI PLRYTLRFLP LDPPDAVADM AKIRDRWFGS
RANMKSLLTE KMTGEAQGQL SADDTVVNLA YDAKQAVNEA REGAVKFGNF TLSVVLRSAD
EKVLADRIKA IKTFLDNAGY VAHLETTNTV EAFLGSLPGH LYENIRRPLM HSLNVADFAP
KTEIWAGEAR CPSPLMNLSD GRKAPPLLYA ATTGNTPFRL NLHVGDLGHS LIAGMTGGGK
STLLALLAAQ WQRYPDSRVI AFDKGMSLYA LTEAMGGQHY DLNGPTSDLF FAPLQHVDDP
AEAAFAADWV EALATLQGMT ITSTERSAIR DAVHGLARES GRSLTALLQM IQNRGIKDAL
QYYTLTGQTG KLLDAESDGL SMADASMITF EMSHLMNGGP AEHRVTVPVL LYLFHRIEQM
LDGRPTLILL DEAWTFLDNE LFLAKLRQWL KELRKKNAAV VFATQSLNDL KNSSLLPVLK
ESCPTKIFLP NRAATSPDLK PLYIDMGLND RQIELVVAST PKQDYYLSTP EGQRRIQFGM
GPVTLAFCGV SDPREVKRVA ELKTQHGDRW PIAWLKERLS PSIRDGWVSY AESLYQGERA
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