| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1326 |
|---|
| Symbol | |
|---|
| ID | 6877300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1283728 |
|---|
| End bp | 1285365 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642789200 |
|---|
| Product | transposase IS66 |
|---|
| Protein accession | YP_002219767 |
|---|
| Protein GI | 198283446 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0424374 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAG CGCCGCAAAC GCCTCTTCCC ACCAGCCCGG ACGCCCTGCG CGATCTGGTG
CTGAGCCTGC TGCAACAGCA GGAGGAACAG GAAGCGGAAC GCACCCGGAT CATCGCCCAA
CAGCAAGCGG CCATTGCCCT GCGCGATGAA ACCATCGCCC GCCTGGAAAG CACCATCGCC
AAACTGCAGC GCTGGCGATT CGGACGCCGT TCGGAAAAGC TCTCTCCCGA CCAGATCAGT
CTTTGGGAAG AAGCGCTGGA TACCGAAATC GCGGCGATGG AAAGCCTCCT CGAAACCGTT
CTGGAAGACA GTGCGGCCGT GACCGCTGGC CGTGCAGAGG GAGCAGCCAC CGACGCGCAG
ACCGTAGCGG TCCCCGCCCG TCCCGTACGC CGGCACCCCG GCCGCATGGC GATCCCCGCC
CATCTGCCCC GGGTAGAAGT ACGTCACGAT CCCAAGACTT GCACTTGCGC GCAATGTGGG
GGTCCACTCG AAACGGTCGG GGAAGAGATC AGCGAAAAAC TGGATTATAT CCCCGGACGC
TTCCAGGTGA TTCGCCATAT CCGCCCCAAA CTGGTCTGCC GCCCCTGCGG TACCCTCGAA
AGTCCGGCAT TACCGGCACA GGTGATTGAC AAGGGCTTGC CCACGGCGCG CCTGGTGGCC
CATGTGATGA CGGCGAAACA CGTGGATCAC CTGCCTTTGT ACCGGCAGGA AACCCAGTAC
CAGCGAGCGG GCGTACCGAT CTCTCGCGCC ACCCTCTGCA GCTGGCTGGG TCAGGGCGAA
TACTGGATCA GTCTGCTCGC CGAAGCCTGC AAAATGGCCT TGCTGGAAGG AAAGATTCTG
CACGCCGACG AGACGCCCTT GCCGGTCCTC AACCCCGGCA GCGGCAAGAC GGACAAAGCC
TATCTCTGGG TGTATCGCAG CCAGGCGGAT GCCCCGCATC CCGTCGTGGT CTTTGATTAT
GCCCCGGACC GTAAGGGGAT CCACGCGCAA CACTTCCTGG GCGACTGGCA AGGCATCCTC
CAGACCGATG ACTATGGGGG CTATGATGCC CTCTACCGCA AGGAACAAGT CACAGAAGCC
GGATGTTGGG CGCATGTACG CCGCCACTTC TATGACGTGG AACAGCGCGG TCCCAGTCCG
GTAGCCCAGA AGGCCCTGGC CTGGATTGCC AAACTCTATG CCATTGAGGC GGAGATCAAG
GAATCTCCAC CGGATCAGAA AGTCGCCGCC CGGCAGCAGC GTGCCGGCCC GCTGCTGGAA
GCCTTCCATA CCTGGCTCAC GGAAACCCAG ATGCAGGTGG CGCCGAAAAG TGGTATTGCC
AAAGCGATGG CCTATGCCCT CAACCGTTGG AAAGCACTGA CGCTCTACCT CGAAGAAGGA
CAACTCAGCA TCGATAATAA TCCGGTAGAG CGGGCGCTGC GGGGCGTGGC CATTGGTCGC
AAGAATTTTT TATTTGTTGG AAATGATGCC GGTGGCGAGC GTGCCGCGTC CTTCTACAGC
ATCATCGAAA CGTGCAAGCT CAACGGCATC GAGCCCTTCG CGTACCTCTG TGACGTGCTC
GAAAAGCTCC CGACCTGGCC CAACAAAAAA CTCCACGAAC TCTTGCCGTG GAACTGGAAA
AAAACTGCAT TAGCTTGA
|
|---|
| Protein sequence | MISAPQTPLP TSPDALRDLV LSLLQQQEEQ EAERTRIIAQ QQAAIALRDE TIARLESTIA
KLQRWRFGRR SEKLSPDQIS LWEEALDTEI AAMESLLETV LEDSAAVTAG RAEGAATDAQ
TVAVPARPVR RHPGRMAIPA HLPRVEVRHD PKTCTCAQCG GPLETVGEEI SEKLDYIPGR
FQVIRHIRPK LVCRPCGTLE SPALPAQVID KGLPTARLVA HVMTAKHVDH LPLYRQETQY
QRAGVPISRA TLCSWLGQGE YWISLLAEAC KMALLEGKIL HADETPLPVL NPGSGKTDKA
YLWVYRSQAD APHPVVVFDY APDRKGIHAQ HFLGDWQGIL QTDDYGGYDA LYRKEQVTEA
GCWAHVRRHF YDVEQRGPSP VAQKALAWIA KLYAIEAEIK ESPPDQKVAA RQQRAGPLLE
AFHTWLTETQ MQVAPKSGIA KAMAYALNRW KALTLYLEEG QLSIDNNPVE RALRGVAIGR
KNFLFVGNDA GGERAASFYS IIETCKLNGI EPFAYLCDVL EKLPTWPNKK LHELLPWNWK
KTALA
|
|---|
| |