| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1304 |
|---|
| Symbol | |
|---|
| ID | 6877278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 1264639 |
|---|
| End bp | 1269012 |
|---|
| Gene Length | 4374 bp |
|---|
| Protein Length | 1457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642789180 |
|---|
| Product | domain of unknown function DUF1738 |
|---|
| Protein accession | YP_002219747 |
|---|
| Protein GI | 198283426 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4227] Antirestriction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000590213 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCC CCGCCTCACC CCGTTCTGGG AACAACACTG AAAAGAAAGA CCATCGTCTT
GAGCTTGCCG ACAGACTGAT TGAACAGATC GAACAGGGCA CGGCGCGATG GCAGCGCCCC
TGGAAGGCTG GAGAGATCCT TGCGCCCGTG AATGCGGTGA CCGGAAAGCC CTACCGTGGG
GTGAATTACG AAAACCTGAT GGCCTTGTCG CCGGACCCCT CTGATCCCCG CTGGTGTACC
TACAAACAGG CCCAGGAGCA GGGCTGGCAG GTGCGCCAGG GTGCTTCCGG CTTGCCGCTG
GAAGTCTGGA AGGAATACGA GCACAAGCGC ACAGAGGAAG AAATCCAGCG ATTGGAGAAA
CAGGGCGTGA CAGATCCCGA GCCGACGGAG CGCCGGTTGG GTGTCCGGTA TTACACCGTG
TTTCACGCCT CGCAGATGGA CGGCATCCCG CCTCTGGAGC GCCAGGAGCC GGACCTGAAA
CTGGAGGGCA AGCCGGATGT GCGGTTGCCG AAGCTGGCCG AGCGCCTGGG CGTGGAATTG
CGGTACGGCG GCGGCCGGGC GTTTTATCGT CCGTCGGAGG ACCGGGTGCA GATGCCTCCC
GTGGAATCTT TCGAGCAGGC TGTGGGGCAT GACACCACCC TCCTGCACGA GCTGTCCCAT
GCCACAGGTC ATGAGAGACG ACTGAACCGC GATCTGAAAA ACTCCTTCGG CAGTGAGAAG
TACGCCATCG AAGAGCTGCG GGCCGAAATG TCGGCGGCCA TGACCGCGGC GAGTTTGGGG
ATCGGCTTTG ATCCCGCATC CCAGGACCTG GAAGAAGGCC GCGAGATGGG TAATTCCGCA
GCCTACCTCG CTTCATGGCT CAAAGCCCTG CCGGAGAAAG AGCGCAAGCA GATCCTGATG
CAGGCCATCA AAGATGCCCA GGGGATCAGC GACTATCTGA TCGAACGGAC GCCGGAATTG
CAGGTGGAGC AGGAGCGACC AGCCCTCTCC CGTGGCGATT ACGTCCGATA CAGGAATGAG
ATTGGGCAAG AGGTTGAGGG CGTGGTGCTT GACGCCGCCC AGGCCGGTGA AGCGACGCGA
CTGAGGCGCA TCTACCGGTG GCCCAACGGC ACCCCCGGCC TGGACGGGGC GGACCACATC
GTGCCCACGG TACTGCCTAA CGACCTGGTG GAACACATCC CGGGCGCTGG CACCCCCGGT
CCGGATCTGG ACGCCATCGA TCCGCAGACC GATGCGTACC AACGCACCAT GGGCATGGAC
GATTCGCGCG ATCGGGCGGG CCGCGCCGTG CTCATGGCGG TCGAAACCGC GCGCGGGCAG
TCGGAGCGGG CGGCGGCCCT GCAGGCGGCG GCCCTACAGG CGGCAGCCTT GCCGGAACGC
GCCCTGGACC CGGAGCTGAT TGCGTTTCTT GAAAACCGCA CCCGCGTCCG GCAAGGCGAA
CACCCGAATT TTGCCGGACT GAGCGATCCC GTCGCCAATG CCGAAGCCTT CGTGGAGCGG
CAAGGCAGTA CCGATCCCCA GCGTTCCGCG CAATGGGCCA GAGCGCTTCA GGAAAGCCCG
GTGGCTTATG GCGAGGCTGT GGGCGTCAGT CCGGCCACGG CGGGTCTCGT TGCTACTCAG
CTGAATGCGG GGGTGCAGCG CATGGAACGA CCCCAGGTCG GCGATCTCGT GCGTTTTGAA
CCGCATGAAC CGGGCGTGAC ATCCAGTCCC TTCTCAGGAC GGATCATCGC GGCCCTGGAT
ACCTCTGGCG GCGATATCCG CTATCACCTG CGGGCGGAGA CGGGGCCAGA TCAGGGTATG
GAGGCCCGTG TCTATGGTCG AGACGGAGAG TTCCGCGAGA TCGCTCTGGA GCAGGCCGTG
GGATTCGACC GGGCTCTCGC TCCAGAGGCA GAGAAAGCCC CCCAGATGAA GGAACAGGCG
CTTCAGGAAT ACCAGGCGTT TTACGCCCAG TTGCCACAGC GGGAAGAGAA ACTGGTGACG
GCGGTCCGCG AGCGCTCCGA GCGCCTGGCT CCGGCGGATT TTCGGGGCTT CTCCGACATG
ATGCGGGATT TTCGCACAGG CGTGGACGAT ACCTTTGGGA TCCTCCGGGA GGGAGAAAAC
CGGGGAGCGT CGGCCCCGGA GTTGCGCCTG GCGCAGGCAT TTACTCCGGA AGAGATCCCC
GATCTGCCTG CCGTCCAAAC CGCCCGTGAC CAGGCAAGAC GGCTTGGCGA GCGATTTCAC
GATCTGGACC GGGAAATCCG GGACGTTTTC AAGGCACGGC TCAGGGAGCA TGGCAAGGCA
CTGCTGGAGT CCGGCAGCCT GCGCGATCCC CGGGAAATCG CGCAGGCGAC CTACTGGAAG
CACGGGATTG AGGCAAGTCC GGACAGCCCG ATGATCGGAA AAGTGGTCGG GGCGATTCAG
GACAAGGATC TCAAAACCCT GCTGGGAATG ATTGGCCACA ACAGCCAAAA CCCGGGATCG
GAAGAGGTGT TTACGCACAT TACGGGTGTA AAACTGGGCA AGACCCAAAA AGAACGGGTC
GCACAGTTGC TGGAGTGGGC CGGTCCTGAA AAGGCGCAGG CCCTGCGGGA AAGCAATGCG
CTGGCGGAGC GGGAACGGGA AGCTCGGGGC TTGCGAGATG GCGTGGTCGG CGCCTGGGCG
GATCTGAAGG GCCTGCGCGT GGATGTTGGT GGCCAGGTGG TGAATGGACA GGAGTATGTG
ACGCTGAAAG TCGCGGGCGG CCAGGATCGC ATTGCTTCTG GCAAGGAGGG TGCGGCAACC
ACGTACCATC TGGTCAATGA CCGGGGCGAG TATTCCCGCG TCAAGGACGT GCGGTTCACA
GCCTTTGCCA AGCGGGTTTT GGCCATGGAC GCCGATGGTA TGGTGCGTAA CGCCCTGGAG
AAGGCAGGCA TTGTGCAAGG GATTGCACCG GAAGGGGTTA CTCCGAAACC GGCTGCCGAT
CTTCAGAAAG AGCAAAAAGC ACCGGAAGCT CCCAGGAAGA ACGCCTACGA GCAAAAAATC
GAGGCGCGCA AGGAACGGTA TCTTGCCCTT TCCGAAAAGA CCCGGGCGCG GGCGAAAGCC
CGCATGGAGC AGGCCAGGCG CATGGCGGAC GCCATCCCTT TTGGTCAGCC GATCCTGGTT
GGCCACCACA GCGAAAAACG CGATCGAAAG TTTCGTGAGC GTATCCACCA GAACTTTGGC
AAAGGCTTCG ACCTGCTGGA GAAGGCAGCG TATTACGAGC GCCGCGCCAA AGGCGTCAAC
GACTACGCCA TCAGCGCGGA CGATCCGGAT GCCGTGAAAA AACTCAGGGA ACGGGTGGAG
AATCTGAAGT CTTCCCAGGA GCGCATGAAG GCGGCGAACG CCGCCATCCG CAAACATCAG
AAGGATGGCC CCGAGGCGCA GCAGGCGGCC CTGGAGCATC TGGGGTTCCA GCCGGACCGG
GCAAAAGCCA TTTTGACCCC GGATGTCATG GGGACCGTGG GTTTTGCGTC GTACTCCCTC
AGCAACAATA ACGCCAACAT CCGGCGGCTG GAAGAGCGTA TTCAGATCCT GGAAAAGGCC
CAGGCCCTGG AGGACCGTGA GACACCGTAT GCCTGGGGAA CGGTTCGGGA GAACAGGGAG
ATCAACCGCA TCCAGTTCCG GTTCGAGGAC AAGCCTGACG AAGAGGTCCG CAATCTCATG
AAGTCGAGCG GCTTTCGGTG GGCGCCTTCC GAGGGCGCCT GGCAACGCCA GTGGACGGGC
AATGCCGTAT ATGCCGCGCG GGATGTCATC AAAAAGCTGG ACGCGCTGAT GCCGCCCGAG
CAGGTGGCAA CCTTGCAGGC GGCCGCCGCG CCGGATTCCG CCCCCAGGCT CGACAATGCC
CCCGCCCCAA AAGGTCATGC GGTGAATCCA TCTGATGCTA TCCGCGACCC CGGTGCCGCG
CTGGTTGCGG CCATCAAGGA CCGCGACGGC GACTGGTACC ACCTTTCCGT GCAGGAAAAC
GATGGCCGTC TGGTGGGGAC CTTGCAGCGG CGCGATGCGG AAACGGGTCT GGTGGAGACG
ATGCCAGCCG GTGTTTTTCA GCCTGACGTG AATTATCGGG TGGTGGCCAG GTTTGAGCGG
GAGTCTGGGG AACTCCTGGC GGTTGGCCTT TCCCGTGGTC GGGATGGCGG TGTGGAACTG
AAGGTCTTTT CCGAGTCGAG GGACGCCGCA GTCTTCGCCT GGCAGCGAAT TCATGAGTAC
CCGGGACATC TGAGGGCCAA TGAAGCGCTC CAGAAAATCC CGGACCACCG GGAGGGCAAG
GTCATCGAAC AGGCTTTGGG CGTGGACCCG AAGATGCTCA ACCCGGCACG GGAAGCCCAC
AGGGTTCCAG CCCGACGGCC GGAGAAGCGG AAGCAGCAGG GTGTGGAGAT ATAG
|
|---|
| Protein sequence | MPVPASPRSG NNTEKKDHRL ELADRLIEQI EQGTARWQRP WKAGEILAPV NAVTGKPYRG
VNYENLMALS PDPSDPRWCT YKQAQEQGWQ VRQGASGLPL EVWKEYEHKR TEEEIQRLEK
QGVTDPEPTE RRLGVRYYTV FHASQMDGIP PLERQEPDLK LEGKPDVRLP KLAERLGVEL
RYGGGRAFYR PSEDRVQMPP VESFEQAVGH DTTLLHELSH ATGHERRLNR DLKNSFGSEK
YAIEELRAEM SAAMTAASLG IGFDPASQDL EEGREMGNSA AYLASWLKAL PEKERKQILM
QAIKDAQGIS DYLIERTPEL QVEQERPALS RGDYVRYRNE IGQEVEGVVL DAAQAGEATR
LRRIYRWPNG TPGLDGADHI VPTVLPNDLV EHIPGAGTPG PDLDAIDPQT DAYQRTMGMD
DSRDRAGRAV LMAVETARGQ SERAAALQAA ALQAAALPER ALDPELIAFL ENRTRVRQGE
HPNFAGLSDP VANAEAFVER QGSTDPQRSA QWARALQESP VAYGEAVGVS PATAGLVATQ
LNAGVQRMER PQVGDLVRFE PHEPGVTSSP FSGRIIAALD TSGGDIRYHL RAETGPDQGM
EARVYGRDGE FREIALEQAV GFDRALAPEA EKAPQMKEQA LQEYQAFYAQ LPQREEKLVT
AVRERSERLA PADFRGFSDM MRDFRTGVDD TFGILREGEN RGASAPELRL AQAFTPEEIP
DLPAVQTARD QARRLGERFH DLDREIRDVF KARLREHGKA LLESGSLRDP REIAQATYWK
HGIEASPDSP MIGKVVGAIQ DKDLKTLLGM IGHNSQNPGS EEVFTHITGV KLGKTQKERV
AQLLEWAGPE KAQALRESNA LAEREREARG LRDGVVGAWA DLKGLRVDVG GQVVNGQEYV
TLKVAGGQDR IASGKEGAAT TYHLVNDRGE YSRVKDVRFT AFAKRVLAMD ADGMVRNALE
KAGIVQGIAP EGVTPKPAAD LQKEQKAPEA PRKNAYEQKI EARKERYLAL SEKTRARAKA
RMEQARRMAD AIPFGQPILV GHHSEKRDRK FRERIHQNFG KGFDLLEKAA YYERRAKGVN
DYAISADDPD AVKKLRERVE NLKSSQERMK AANAAIRKHQ KDGPEAQQAA LEHLGFQPDR
AKAILTPDVM GTVGFASYSL SNNNANIRRL EERIQILEKA QALEDRETPY AWGTVRENRE
INRIQFRFED KPDEEVRNLM KSSGFRWAPS EGAWQRQWTG NAVYAARDVI KKLDALMPPE
QVATLQAAAA PDSAPRLDNA PAPKGHAVNP SDAIRDPGAA LVAAIKDRDG DWYHLSVQEN
DGRLVGTLQR RDAETGLVET MPAGVFQPDV NYRVVARFER ESGELLAVGL SRGRDGGVEL
KVFSESRDAA VFAWQRIHEY PGHLRANEAL QKIPDHREGK VIEQALGVDP KMLNPAREAH
RVPARRPEKR KQQGVEI
|
|---|
| |