| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1224 |
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| Symbol | |
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| ID | 6877197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1193462 |
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| End bp | 1194622 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642789101 |
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| Product | homocitrate synthase |
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| Protein accession | YP_002219669 |
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| Protein GI | 198283348 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000100599 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATGAGC TCAGCCCTTT CTCCCGCGAC TTTGCGGTAA TCCACGACAC CACCCTACGC
GATGGCGAAC AGACCGCCGG GGTCGCGTTC CGCCCGGACG AAAAGCTCAC CATCGCCAAG
AGTCTGGCCG ATGCCGGGAT TCCGGAACTG GAGATCGGCA TCCCCGCCAT GGGGAGCGAA
GAGGAGGAAA CCATCCGGGG CATTGCTCAG ATGGGCCTGC CCGCCCGTCT GGTGGTCTGG
TGCCGGATGC ACGATACGGA CCTGGGCGCG GCAAAGCGTT GTGCCGTGGA CATGGTCAAT
GCCTCAGTGC CGGTGTCGGA TATCCAGATT CGGGGCAAGC TGGGCAAAGA TCGTCAGTGG
GTCCTACAGC AGGTGGATCG CCGGGTGAAG CAGGTACTGG ACAGCGGCAT GGATGTGGCG
GTAGGCGGCG AAGATGCCTC CCGGGCACCC TTGGATTTTG TTCTGCGAGT CATGGAAGTC
GCGCAACGAG CCGGGGCGCG CCGCTTTCGT TATGCCGACA CCCTGGGCAT CCTGGAACCC
TTTAATACCG CCCATATCAT GCGGCGCTTA AGGGCGGTCA CGGACATGGA AATCGAAATC
CATGCCCATA ACGATCTGGG TCTGGCCACT GCCAACTCCG TCGCTGCCCT GCGTTTTGGT
GCCACCCATG TAAACACGAC GGTGAACGGC CTGGGCGAGC GCGCCGGCAA CGCCGCGCTG
GAGGAAGTCG TGATGTGCCT GCACCATCTG CACGGCATCG AGACAGGTAT CGACGTGCGC
CAGTTCAAAG CGATTTCGCA ACTGGTGGCA CTGGCATCCG CCCGCCCCGT CCCCGCCGGG
AAAAGCATCG TCGGAGATGC CATCTTCAGC CACGAGTCCG GTATCCATGT CGATGGATTA
CTCAAAAATC CCCGGAATTA CCAAAGCTTC GACCCGGAGG AGCTGGGGCG CCAGCATCAC
TTGGTACTGG GTAAGCATTC CGGTACCAAG GCTATCATGC GTGCCTATGC TGAACTGGGG
AGCATTATCA CCGAGTCACA GGCACAAAAC ATCCTCAGAC AGATTCGCGT CTATGTACTT
CAGCATAAAG TAACGCCGCC GGTCGAAGAT ATGCATCGCT TTCTTCTGGA AAGCATGGAA
TCCCCGCACG TCCATTCCTG A
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| Protein sequence | MHELSPFSRD FAVIHDTTLR DGEQTAGVAF RPDEKLTIAK SLADAGIPEL EIGIPAMGSE
EEETIRGIAQ MGLPARLVVW CRMHDTDLGA AKRCAVDMVN ASVPVSDIQI RGKLGKDRQW
VLQQVDRRVK QVLDSGMDVA VGGEDASRAP LDFVLRVMEV AQRAGARRFR YADTLGILEP
FNTAHIMRRL RAVTDMEIEI HAHNDLGLAT ANSVAALRFG ATHVNTTVNG LGERAGNAAL
EEVVMCLHHL HGIETGIDVR QFKAISQLVA LASARPVPAG KSIVGDAIFS HESGIHVDGL
LKNPRNYQSF DPEELGRQHH LVLGKHSGTK AIMRAYAELG SIITESQAQN ILRQIRVYVL
QHKVTPPVED MHRFLLESME SPHVHS
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