Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1224 |
Symbol | |
ID | 6877197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1193462 |
End bp | 1194622 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642789101 |
Product | homocitrate synthase |
Protein accession | YP_002219669 |
Protein GI | 198283348 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000100599 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATGAGC TCAGCCCTTT CTCCCGCGAC TTTGCGGTAA TCCACGACAC CACCCTACGC GATGGCGAAC AGACCGCCGG GGTCGCGTTC CGCCCGGACG AAAAGCTCAC CATCGCCAAG AGTCTGGCCG ATGCCGGGAT TCCGGAACTG GAGATCGGCA TCCCCGCCAT GGGGAGCGAA GAGGAGGAAA CCATCCGGGG CATTGCTCAG ATGGGCCTGC CCGCCCGTCT GGTGGTCTGG TGCCGGATGC ACGATACGGA CCTGGGCGCG GCAAAGCGTT GTGCCGTGGA CATGGTCAAT GCCTCAGTGC CGGTGTCGGA TATCCAGATT CGGGGCAAGC TGGGCAAAGA TCGTCAGTGG GTCCTACAGC AGGTGGATCG CCGGGTGAAG CAGGTACTGG ACAGCGGCAT GGATGTGGCG GTAGGCGGCG AAGATGCCTC CCGGGCACCC TTGGATTTTG TTCTGCGAGT CATGGAAGTC GCGCAACGAG CCGGGGCGCG CCGCTTTCGT TATGCCGACA CCCTGGGCAT CCTGGAACCC TTTAATACCG CCCATATCAT GCGGCGCTTA AGGGCGGTCA CGGACATGGA AATCGAAATC CATGCCCATA ACGATCTGGG TCTGGCCACT GCCAACTCCG TCGCTGCCCT GCGTTTTGGT GCCACCCATG TAAACACGAC GGTGAACGGC CTGGGCGAGC GCGCCGGCAA CGCCGCGCTG GAGGAAGTCG TGATGTGCCT GCACCATCTG CACGGCATCG AGACAGGTAT CGACGTGCGC CAGTTCAAAG CGATTTCGCA ACTGGTGGCA CTGGCATCCG CCCGCCCCGT CCCCGCCGGG AAAAGCATCG TCGGAGATGC CATCTTCAGC CACGAGTCCG GTATCCATGT CGATGGATTA CTCAAAAATC CCCGGAATTA CCAAAGCTTC GACCCGGAGG AGCTGGGGCG CCAGCATCAC TTGGTACTGG GTAAGCATTC CGGTACCAAG GCTATCATGC GTGCCTATGC TGAACTGGGG AGCATTATCA CCGAGTCACA GGCACAAAAC ATCCTCAGAC AGATTCGCGT CTATGTACTT CAGCATAAAG TAACGCCGCC GGTCGAAGAT ATGCATCGCT TTCTTCTGGA AAGCATGGAA TCCCCGCACG TCCATTCCTG A
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Protein sequence | MHELSPFSRD FAVIHDTTLR DGEQTAGVAF RPDEKLTIAK SLADAGIPEL EIGIPAMGSE EEETIRGIAQ MGLPARLVVW CRMHDTDLGA AKRCAVDMVN ASVPVSDIQI RGKLGKDRQW VLQQVDRRVK QVLDSGMDVA VGGEDASRAP LDFVLRVMEV AQRAGARRFR YADTLGILEP FNTAHIMRRL RAVTDMEIEI HAHNDLGLAT ANSVAALRFG ATHVNTTVNG LGERAGNAAL EEVVMCLHHL HGIETGIDVR QFKAISQLVA LASARPVPAG KSIVGDAIFS HESGIHVDGL LKNPRNYQSF DPEELGRQHH LVLGKHSGTK AIMRAYAELG SIITESQAQN ILRQIRVYVL QHKVTPPVED MHRFLLESME SPHVHS
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